Experiment: Bas05
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BNILDI_03470 and BNILDI_03480 are separated by 375 nucleotides BNILDI_03480 and yhjV are separated by 475 nucleotides yhjV and dppF are separated by 29 nucleotides
BNILDI_03470: BNILDI_03470 - Type I toxin-antitoxin system toxin Ldr family protein, at 680,169 to 680,276
_03470
BNILDI_03480: BNILDI_03480 - Type I toxin-antitoxin system toxin Ldr family protein, at 680,652 to 680,759
_03480
BNILDI_03490: yhjV - Inner membrane transport protein YhjV, at 681,235 to 682,506
yhjV
BNILDI_03495: dppF - dipeptide ABC transporter ATP-binding subunit DppF, at 682,536 to 683,540
dppF
Position (kb) 681
682
683 Strain fitness (log2 ratio) -1
0
1
2 at 680.293 kb on + strand at 680.474 kb on - strand at 680.762 kb on - strand at 680.776 kb on + strand at 680.811 kb on + strand at 680.833 kb on + strand at 680.833 kb on + strand at 680.850 kb on - strand at 681.018 kb on - strand at 681.026 kb on + strand at 681.146 kb on + strand at 681.147 kb on - strand at 681.154 kb on - strand at 681.193 kb on + strand at 681.234 kb on + strand at 681.234 kb on + strand at 681.235 kb on - strand at 681.235 kb on - strand at 681.280 kb on - strand at 681.305 kb on + strand at 681.306 kb on - strand at 681.309 kb on - strand at 681.314 kb on + strand at 681.314 kb on + strand at 681.315 kb on - strand at 681.384 kb on + strand, within yhjV at 681.384 kb on + strand, within yhjV at 681.384 kb on + strand, within yhjV at 681.385 kb on - strand, within yhjV at 681.385 kb on - strand, within yhjV at 681.440 kb on + strand, within yhjV at 681.475 kb on + strand, within yhjV at 681.476 kb on - strand, within yhjV at 681.497 kb on - strand, within yhjV at 681.532 kb on - strand, within yhjV at 681.536 kb on - strand, within yhjV at 681.654 kb on + strand, within yhjV at 681.801 kb on + strand, within yhjV at 681.801 kb on + strand, within yhjV at 681.801 kb on + strand, within yhjV at 681.802 kb on - strand, within yhjV at 681.803 kb on + strand, within yhjV at 681.850 kb on - strand, within yhjV at 681.850 kb on - strand, within yhjV at 681.882 kb on + strand, within yhjV at 681.883 kb on - strand, within yhjV at 681.894 kb on + strand, within yhjV at 681.906 kb on + strand, within yhjV at 681.918 kb on + strand, within yhjV at 681.975 kb on + strand, within yhjV at 681.976 kb on - strand, within yhjV at 681.979 kb on + strand, within yhjV at 681.981 kb on + strand, within yhjV at 681.981 kb on + strand, within yhjV at 681.982 kb on - strand, within yhjV at 682.023 kb on + strand, within yhjV at 682.071 kb on + strand, within yhjV at 682.113 kb on + strand, within yhjV at 682.113 kb on + strand, within yhjV at 682.114 kb on - strand, within yhjV at 682.143 kb on + strand, within yhjV at 682.296 kb on + strand, within yhjV at 682.296 kb on + strand, within yhjV at 682.296 kb on + strand, within yhjV at 682.297 kb on - strand, within yhjV at 682.297 kb on - strand, within yhjV at 682.297 kb on - strand, within yhjV at 682.297 kb on - strand, within yhjV at 682.297 kb on - strand, within yhjV at 682.361 kb on + strand, within yhjV at 682.362 kb on - strand, within yhjV at 682.363 kb on + strand, within yhjV at 682.364 kb on - strand, within yhjV at 682.402 kb on + strand at 682.403 kb on - strand at 682.403 kb on - strand at 682.403 kb on - strand at 682.405 kb on - strand at 682.438 kb on - strand at 682.448 kb on + strand at 682.537 kb on + strand at 682.578 kb on + strand at 682.578 kb on + strand at 682.578 kb on + strand at 682.594 kb on + strand at 682.603 kb on - strand at 682.834 kb on + strand, within dppF at 682.835 kb on - strand, within dppF at 682.835 kb on - strand, within dppF at 682.890 kb on - strand, within dppF at 682.897 kb on + strand, within dppF at 682.898 kb on - strand, within dppF at 682.898 kb on - strand, within dppF at 682.898 kb on - strand, within dppF at 682.898 kb on - strand, within dppF at 682.898 kb on - strand, within dppF at 683.060 kb on + strand, within dppF at 683.077 kb on + strand, within dppF at 683.077 kb on + strand, within dppF at 683.078 kb on - strand, within dppF at 683.156 kb on + strand, within dppF at 683.159 kb on + strand, within dppF at 683.159 kb on + strand, within dppF at 683.160 kb on - strand, within dppF at 683.302 kb on + strand, within dppF at 683.302 kb on + strand, within dppF at 683.302 kb on + strand, within dppF at 683.303 kb on - strand, within dppF at 683.303 kb on - strand, within dppF
Per-strain Table
Position Strand Gene LocusTag Fraction Bas05 remove 680,293 + -1.2 680,474 - -0.2 680,762 - +1.4 680,776 + -1.2 680,811 + -1.6 680,833 + -1.4 680,833 + +1.0 680,850 - +0.6 681,018 - -0.7 681,026 + +0.9 681,146 + -0.1 681,147 - +0.4 681,154 - +0.4 681,193 + +0.3 681,234 + +0.7 681,234 + -0.7 681,235 - +0.9 681,235 - +0.4 681,280 - +0.4 681,305 + +0.1 681,306 - -0.1 681,309 - -0.7 681,314 + +1.1 681,314 + +0.4 681,315 - -0.6 681,384 + yhjV BNILDI_03490 0.12 -0.0 681,384 + yhjV BNILDI_03490 0.12 +0.2 681,384 + yhjV BNILDI_03490 0.12 -0.9 681,385 - yhjV BNILDI_03490 0.12 +0.1 681,385 - yhjV BNILDI_03490 0.12 +1.4 681,440 + yhjV BNILDI_03490 0.16 -0.3 681,475 + yhjV BNILDI_03490 0.19 -0.5 681,476 - yhjV BNILDI_03490 0.19 -0.5 681,497 - yhjV BNILDI_03490 0.21 -0.6 681,532 - yhjV BNILDI_03490 0.23 -1.1 681,536 - yhjV BNILDI_03490 0.24 +0.6 681,654 + yhjV BNILDI_03490 0.33 -1.3 681,801 + yhjV BNILDI_03490 0.44 +0.2 681,801 + yhjV BNILDI_03490 0.44 -0.5 681,801 + yhjV BNILDI_03490 0.44 -0.7 681,802 - yhjV BNILDI_03490 0.45 +0.3 681,803 + yhjV BNILDI_03490 0.45 +0.7 681,850 - yhjV BNILDI_03490 0.48 -0.4 681,850 - yhjV BNILDI_03490 0.48 +1.9 681,882 + yhjV BNILDI_03490 0.51 -0.2 681,883 - yhjV BNILDI_03490 0.51 -0.2 681,894 + yhjV BNILDI_03490 0.52 -1.0 681,906 + yhjV BNILDI_03490 0.53 +0.7 681,918 + yhjV BNILDI_03490 0.54 -0.3 681,975 + yhjV BNILDI_03490 0.58 -0.3 681,976 - yhjV BNILDI_03490 0.58 +0.1 681,979 + yhjV BNILDI_03490 0.58 -0.2 681,981 + yhjV BNILDI_03490 0.59 -1.1 681,981 + yhjV BNILDI_03490 0.59 -0.0 681,982 - yhjV BNILDI_03490 0.59 -0.8 682,023 + yhjV BNILDI_03490 0.62 +0.1 682,071 + yhjV BNILDI_03490 0.66 -1.3 682,113 + yhjV BNILDI_03490 0.69 +0.1 682,113 + yhjV BNILDI_03490 0.69 -0.1 682,114 - yhjV BNILDI_03490 0.69 -0.1 682,143 + yhjV BNILDI_03490 0.71 -1.6 682,296 + yhjV BNILDI_03490 0.83 -0.4 682,296 + yhjV BNILDI_03490 0.83 +1.4 682,296 + yhjV BNILDI_03490 0.83 -0.3 682,297 - yhjV BNILDI_03490 0.83 -0.1 682,297 - yhjV BNILDI_03490 0.83 +0.1 682,297 - yhjV BNILDI_03490 0.83 -0.8 682,297 - yhjV BNILDI_03490 0.83 +0.5 682,297 - yhjV BNILDI_03490 0.83 +2.2 682,361 + yhjV BNILDI_03490 0.89 +1.1 682,362 - yhjV BNILDI_03490 0.89 +0.1 682,363 + yhjV BNILDI_03490 0.89 +0.1 682,364 - yhjV BNILDI_03490 0.89 +0.0 682,402 + -1.4 682,403 - +0.0 682,403 - -0.3 682,403 - +0.9 682,405 - +0.0 682,438 - +1.3 682,448 + +0.5 682,537 + +1.2 682,578 + -1.3 682,578 + +1.2 682,578 + -0.0 682,594 + -0.4 682,603 - -1.5 682,834 + dppF BNILDI_03495 0.30 -1.1 682,835 - dppF BNILDI_03495 0.30 +0.5 682,835 - dppF BNILDI_03495 0.30 -1.0 682,890 - dppF BNILDI_03495 0.35 -0.1 682,897 + dppF BNILDI_03495 0.36 -0.4 682,898 - dppF BNILDI_03495 0.36 +0.6 682,898 - dppF BNILDI_03495 0.36 -0.5 682,898 - dppF BNILDI_03495 0.36 -0.7 682,898 - dppF BNILDI_03495 0.36 -0.3 682,898 - dppF BNILDI_03495 0.36 -0.6 683,060 + dppF BNILDI_03495 0.52 -0.3 683,077 + dppF BNILDI_03495 0.54 -0.9 683,077 + dppF BNILDI_03495 0.54 -1.3 683,078 - dppF BNILDI_03495 0.54 -0.6 683,156 + dppF BNILDI_03495 0.62 -0.5 683,159 + dppF BNILDI_03495 0.62 +0.5 683,159 + dppF BNILDI_03495 0.62 +0.4 683,160 - dppF BNILDI_03495 0.62 +1.2 683,302 + dppF BNILDI_03495 0.76 -0.4 683,302 + dppF BNILDI_03495 0.76 +0.2 683,302 + dppF BNILDI_03495 0.76 -0.3 683,303 - dppF BNILDI_03495 0.76 +1.5 683,303 - dppF BNILDI_03495 0.76 -0.4
Or see this region's nucleotide sequence