Experiment: Bas05
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yhiN and pitA are separated by 231 nucleotides pitA and uspB are separated by 70 nucleotides uspB and uspA are separated by 390 nucleotides
BNILDI_03180: yhiN - Uncharacterized protein YhiN, at 615,975 to 617,177
yhiN
BNILDI_03185: pitA - inorganic phosphate transporter PitA, at 617,409 to 618,908
pitA
BNILDI_03190: uspB - universal stress protein UspB, at 618,979 to 619,314
uspB
BNILDI_03195: uspA - universal stress protein UspA, at 619,705 to 620,139
uspA
Position (kb) 617
618
619 Strain fitness (log2 ratio) -2
-1
0
1
2 at 616.442 kb on - strand, within yhiN at 616.495 kb on - strand, within yhiN at 616.495 kb on - strand, within yhiN at 616.495 kb on - strand, within yhiN at 616.495 kb on - strand, within yhiN at 616.586 kb on + strand, within yhiN at 616.586 kb on + strand, within yhiN at 616.655 kb on + strand, within yhiN at 616.655 kb on + strand, within yhiN at 616.655 kb on + strand, within yhiN at 616.656 kb on - strand, within yhiN at 616.656 kb on - strand, within yhiN at 616.809 kb on + strand, within yhiN at 616.810 kb on - strand, within yhiN at 616.810 kb on - strand, within yhiN at 616.810 kb on - strand, within yhiN at 616.885 kb on - strand, within yhiN at 617.011 kb on + strand, within yhiN at 617.011 kb on + strand, within yhiN at 617.048 kb on + strand, within yhiN at 617.048 kb on + strand, within yhiN at 617.048 kb on + strand, within yhiN at 617.133 kb on - strand at 617.133 kb on - strand at 617.151 kb on + strand at 617.153 kb on + strand at 617.153 kb on + strand at 617.154 kb on - strand at 617.154 kb on - strand at 617.334 kb on + strand at 617.401 kb on - strand at 617.408 kb on + strand at 617.442 kb on - strand at 617.628 kb on + strand, within pitA at 617.642 kb on + strand, within pitA at 617.745 kb on + strand, within pitA at 618.119 kb on + strand, within pitA at 618.277 kb on + strand, within pitA at 618.278 kb on - strand, within pitA at 618.536 kb on + strand, within pitA at 618.549 kb on + strand, within pitA at 618.754 kb on + strand, within pitA at 618.755 kb on - strand, within pitA at 618.755 kb on - strand, within pitA at 618.787 kb on + strand at 618.787 kb on + strand at 618.788 kb on - strand at 618.809 kb on + strand at 618.810 kb on - strand at 618.882 kb on + strand at 618.912 kb on + strand at 618.965 kb on + strand at 618.965 kb on + strand at 618.965 kb on + strand at 618.965 kb on + strand at 618.966 kb on - strand at 618.966 kb on - strand at 619.045 kb on - strand, within uspB at 619.115 kb on + strand, within uspB at 619.115 kb on + strand, within uspB at 619.116 kb on - strand, within uspB at 619.116 kb on - strand, within uspB at 619.116 kb on - strand, within uspB at 619.119 kb on + strand, within uspB at 619.119 kb on + strand, within uspB at 619.119 kb on + strand, within uspB at 619.120 kb on - strand, within uspB at 619.120 kb on - strand, within uspB at 619.120 kb on - strand, within uspB at 619.121 kb on + strand, within uspB at 619.122 kb on - strand, within uspB at 619.122 kb on - strand, within uspB at 619.122 kb on - strand, within uspB at 619.122 kb on - strand, within uspB at 619.226 kb on - strand, within uspB at 619.282 kb on + strand at 619.282 kb on + strand at 619.282 kb on + strand at 619.282 kb on + strand at 619.283 kb on - strand at 619.283 kb on - strand at 619.283 kb on - strand at 619.314 kb on + strand at 619.315 kb on - strand at 619.315 kb on - strand at 619.315 kb on - strand at 619.442 kb on + strand at 619.443 kb on - strand at 619.443 kb on - strand at 619.443 kb on - strand at 619.443 kb on - strand at 619.443 kb on - strand at 619.443 kb on - strand at 619.443 kb on - strand at 619.446 kb on + strand at 619.446 kb on + strand at 619.446 kb on + strand at 619.447 kb on - strand at 619.447 kb on - strand at 619.447 kb on - strand at 619.447 kb on - strand at 619.452 kb on - strand at 619.496 kb on + strand at 619.496 kb on + strand at 619.497 kb on - strand at 619.498 kb on + strand at 619.498 kb on + strand at 619.498 kb on + strand at 619.499 kb on - strand at 619.565 kb on - strand at 619.566 kb on + strand at 619.567 kb on - strand at 619.567 kb on - strand at 619.622 kb on + strand at 619.623 kb on - strand at 619.663 kb on + strand at 619.704 kb on + strand at 619.704 kb on + strand at 619.711 kb on + strand at 619.712 kb on - strand at 619.713 kb on + strand at 619.820 kb on + strand, within uspA at 619.820 kb on + strand, within uspA at 619.826 kb on + strand, within uspA at 619.826 kb on + strand, within uspA at 619.827 kb on - strand, within uspA at 619.831 kb on + strand, within uspA at 619.841 kb on + strand, within uspA at 619.841 kb on + strand, within uspA at 619.842 kb on - strand, within uspA at 619.844 kb on - strand, within uspA at 619.876 kb on - strand, within uspA at 619.876 kb on - strand, within uspA
Per-strain Table
Position Strand Gene LocusTag Fraction Bas05 remove 616,442 - yhiN BNILDI_03180 0.39 -0.9 616,495 - yhiN BNILDI_03180 0.43 +1.2 616,495 - yhiN BNILDI_03180 0.43 +0.4 616,495 - yhiN BNILDI_03180 0.43 -0.4 616,495 - yhiN BNILDI_03180 0.43 +0.9 616,586 + yhiN BNILDI_03180 0.51 +0.2 616,586 + yhiN BNILDI_03180 0.51 -0.4 616,655 + yhiN BNILDI_03180 0.57 -0.4 616,655 + yhiN BNILDI_03180 0.57 +0.9 616,655 + yhiN BNILDI_03180 0.57 -1.5 616,656 - yhiN BNILDI_03180 0.57 +0.1 616,656 - yhiN BNILDI_03180 0.57 +0.4 616,809 + yhiN BNILDI_03180 0.69 +0.1 616,810 - yhiN BNILDI_03180 0.69 +0.6 616,810 - yhiN BNILDI_03180 0.69 -1.1 616,810 - yhiN BNILDI_03180 0.69 +0.4 616,885 - yhiN BNILDI_03180 0.76 +1.1 617,011 + yhiN BNILDI_03180 0.86 -0.2 617,011 + yhiN BNILDI_03180 0.86 -0.1 617,048 + yhiN BNILDI_03180 0.89 -0.5 617,048 + yhiN BNILDI_03180 0.89 -0.4 617,048 + yhiN BNILDI_03180 0.89 +0.0 617,133 - +0.3 617,133 - -0.3 617,151 + -0.1 617,153 + -1.3 617,153 + +0.8 617,154 - -1.4 617,154 - +1.4 617,334 + -0.6 617,401 - -1.8 617,408 + -0.2 617,442 - +0.6 617,628 + pitA BNILDI_03185 0.15 -1.9 617,642 + pitA BNILDI_03185 0.16 -0.4 617,745 + pitA BNILDI_03185 0.22 -0.6 618,119 + pitA BNILDI_03185 0.47 -0.8 618,277 + pitA BNILDI_03185 0.58 -0.2 618,278 - pitA BNILDI_03185 0.58 -0.4 618,536 + pitA BNILDI_03185 0.75 -0.8 618,549 + pitA BNILDI_03185 0.76 -0.4 618,754 + pitA BNILDI_03185 0.90 +1.4 618,755 - pitA BNILDI_03185 0.90 +0.2 618,755 - pitA BNILDI_03185 0.90 -1.2 618,787 + +2.4 618,787 + -0.6 618,788 - -0.3 618,809 + +0.1 618,810 - -0.9 618,882 + -0.5 618,912 + +0.0 618,965 + +0.0 618,965 + -0.4 618,965 + +0.6 618,965 + -0.3 618,966 - -0.5 618,966 - -0.4 619,045 - uspB BNILDI_03190 0.20 +0.0 619,115 + uspB BNILDI_03190 0.40 -0.2 619,115 + uspB BNILDI_03190 0.40 -0.1 619,116 - uspB BNILDI_03190 0.41 +0.7 619,116 - uspB BNILDI_03190 0.41 +0.5 619,116 - uspB BNILDI_03190 0.41 -0.4 619,119 + uspB BNILDI_03190 0.42 +0.4 619,119 + uspB BNILDI_03190 0.42 +0.1 619,119 + uspB BNILDI_03190 0.42 +0.0 619,120 - uspB BNILDI_03190 0.42 -0.9 619,120 - uspB BNILDI_03190 0.42 +0.1 619,120 - uspB BNILDI_03190 0.42 -1.2 619,121 + uspB BNILDI_03190 0.42 +0.4 619,122 - uspB BNILDI_03190 0.43 +0.8 619,122 - uspB BNILDI_03190 0.43 -0.0 619,122 - uspB BNILDI_03190 0.43 -0.8 619,122 - uspB BNILDI_03190 0.43 +1.3 619,226 - uspB BNILDI_03190 0.74 +0.4 619,282 + +1.9 619,282 + +0.0 619,282 + +0.6 619,282 + +0.2 619,283 - -1.1 619,283 - +0.1 619,283 - +0.5 619,314 + +0.0 619,315 - -1.4 619,315 - -1.6 619,315 - -0.5 619,442 + +1.1 619,443 - -0.0 619,443 - +0.6 619,443 - -0.2 619,443 - -0.7 619,443 - -0.1 619,443 - +0.3 619,443 - +0.6 619,446 + +0.8 619,446 + +0.1 619,446 + +1.0 619,447 - +2.4 619,447 - -0.0 619,447 - -0.1 619,447 - +0.8 619,452 - -0.3 619,496 + -2.3 619,496 + -1.0 619,497 - -0.3 619,498 + -0.1 619,498 + +0.3 619,498 + -0.9 619,499 - +1.9 619,565 - -1.1 619,566 + +0.2 619,567 - -0.8 619,567 - +2.5 619,622 + +0.6 619,623 - +0.2 619,663 + +0.0 619,704 + +0.5 619,704 + +0.9 619,711 + +0.0 619,712 - -0.2 619,713 + -0.1 619,820 + uspA BNILDI_03195 0.26 +0.7 619,820 + uspA BNILDI_03195 0.26 -0.1 619,826 + uspA BNILDI_03195 0.28 +0.6 619,826 + uspA BNILDI_03195 0.28 -0.2 619,827 - uspA BNILDI_03195 0.28 -2.3 619,831 + uspA BNILDI_03195 0.29 -0.6 619,841 + uspA BNILDI_03195 0.31 +0.4 619,841 + uspA BNILDI_03195 0.31 -1.0 619,842 - uspA BNILDI_03195 0.31 +0.7 619,844 - uspA BNILDI_03195 0.32 -1.3 619,876 - uspA BNILDI_03195 0.39 -0.4 619,876 - uspA BNILDI_03195 0.39 +0.2
Or see this region's nucleotide sequence