Experiment: Bas05
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt glpG and glpE are separated by 44 nucleotides glpE and glpD are separated by 189 nucleotides glpD and BNILDI_02800 are separated by 53 nucleotides BNILDI_02800 and BNILDI_02805 are separated by 2 nucleotides
BNILDI_02785: glpG - rhomboid family intramembrane serine protease GlpG, at 537,348 to 538,178
glpG
BNILDI_02790: glpE - thiosulfate sulfurtransferase GlpE, at 538,223 to 538,549
glpE
BNILDI_02795: glpD - glycerol-3-phosphate dehydrogenase, at 538,739 to 540,244
glpD
BNILDI_02800: BNILDI_02800 - Ybl142, at 540,298 to 540,903
_02800
BNILDI_02805: BNILDI_02805 - hypothetical protein, at 540,906 to 541,673
_02805
Position (kb) 538
539
540
541 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 537.817 kb on - strand, within glpG at 537.989 kb on - strand, within glpG at 538.121 kb on + strand at 538.123 kb on + strand at 538.123 kb on + strand at 538.166 kb on + strand at 538.214 kb on + strand at 538.215 kb on - strand at 538.216 kb on + strand at 538.217 kb on - strand at 538.234 kb on - strand at 538.288 kb on + strand, within glpE at 538.290 kb on + strand, within glpE at 538.320 kb on + strand, within glpE at 538.343 kb on - strand, within glpE at 538.396 kb on + strand, within glpE at 538.529 kb on - strand at 538.529 kb on - strand at 538.614 kb on + strand at 538.631 kb on + strand at 538.688 kb on - strand at 539.057 kb on - strand, within glpD at 539.060 kb on + strand, within glpD at 539.130 kb on + strand, within glpD at 539.852 kb on + strand, within glpD at 539.856 kb on - strand, within glpD at 539.988 kb on - strand, within glpD at 540.095 kb on + strand at 540.096 kb on - strand at 540.212 kb on + strand at 540.212 kb on + strand at 540.215 kb on - strand at 540.304 kb on + strand at 540.305 kb on - strand at 540.346 kb on + strand at 540.346 kb on + strand at 540.347 kb on - strand at 540.411 kb on - strand, within BNILDI_02800 at 540.531 kb on + strand, within BNILDI_02800 at 540.948 kb on + strand at 541.155 kb on + strand, within BNILDI_02805 at 541.200 kb on - strand, within BNILDI_02805
Per-strain Table
Position Strand Gene LocusTag Fraction Bas05 remove 537,817 - glpG BNILDI_02785 0.56 +1.6 537,989 - glpG BNILDI_02785 0.77 +0.9 538,121 + -0.3 538,123 + -1.5 538,123 + +1.2 538,166 + -2.3 538,214 + -1.9 538,215 - -2.8 538,216 + -0.0 538,217 - +1.4 538,234 - -0.3 538,288 + glpE BNILDI_02790 0.20 -1.6 538,290 + glpE BNILDI_02790 0.20 -0.4 538,320 + glpE BNILDI_02790 0.30 -0.9 538,343 - glpE BNILDI_02790 0.37 -0.8 538,396 + glpE BNILDI_02790 0.53 +0.6 538,529 - -1.2 538,529 - +1.4 538,614 + -0.2 538,631 + -1.4 538,688 - -1.2 539,057 - glpD BNILDI_02795 0.21 -1.3 539,060 + glpD BNILDI_02795 0.21 -2.2 539,130 + glpD BNILDI_02795 0.26 -0.9 539,852 + glpD BNILDI_02795 0.74 +1.4 539,856 - glpD BNILDI_02795 0.74 -1.4 539,988 - glpD BNILDI_02795 0.83 +0.4 540,095 + -1.1 540,096 - -2.6 540,212 + +0.6 540,212 + +3.2 540,215 - -1.7 540,304 + -0.4 540,305 - -2.0 540,346 + +0.2 540,346 + +0.3 540,347 - +0.3 540,411 - BNILDI_02800 0.19 -0.3 540,531 + BNILDI_02800 0.38 +0.0 540,948 + +0.2 541,155 + BNILDI_02805 0.32 -0.4 541,200 - BNILDI_02805 0.38 +0.8
Or see this region's nucleotide sequence