Experiment: Bas05
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt aroE and tsaC are separated by 4 nucleotides tsaC and yrdD are separated by 4 nucleotides yrdD and smg are separated by 28 nucleotides smg and dprA overlap by 29 nucleotides
BNILDI_02165: aroE - shikimate dehydrogenase, at 427,097 to 427,915
aroE
BNILDI_02170: tsaC - L-threonylcarbamoyladenylate synthase type 1 TsaC, at 427,920 to 428,492
tsaC
BNILDI_02175: yrdD - Uncharacterized protein YrdD, at 428,497 to 429,039
yrdD
BNILDI_02180: smg - DUF494 domain-containing protein, at 429,068 to 429,541
smg
BNILDI_02185: dprA - DNA-protecting protein DprA, at 429,513 to 430,637
dprA
Position (kb) 428
429
430 Strain fitness (log2 ratio) -2
-1
0
1
2 at 427.511 kb on + strand, within aroE at 427.514 kb on + strand, within aroE at 427.553 kb on - strand, within aroE at 427.553 kb on - strand, within aroE at 427.605 kb on - strand, within aroE at 427.661 kb on - strand, within aroE at 427.661 kb on - strand, within aroE at 427.819 kb on - strand, within aroE at 427.905 kb on + strand at 427.905 kb on + strand at 428.530 kb on - strand at 428.727 kb on + strand, within yrdD at 428.728 kb on - strand, within yrdD at 428.728 kb on - strand, within yrdD at 428.785 kb on - strand, within yrdD at 428.821 kb on + strand, within yrdD at 428.878 kb on - strand, within yrdD at 428.913 kb on - strand, within yrdD at 429.048 kb on - strand at 429.058 kb on - strand at 429.070 kb on - strand at 429.079 kb on + strand at 429.080 kb on - strand at 429.142 kb on + strand, within smg at 429.164 kb on + strand, within smg at 429.324 kb on + strand, within smg at 429.328 kb on + strand, within smg at 429.329 kb on - strand, within smg at 429.420 kb on + strand, within smg at 429.420 kb on + strand, within smg at 429.421 kb on - strand, within smg at 429.421 kb on - strand, within smg at 429.424 kb on + strand, within smg at 429.506 kb on - strand at 429.507 kb on + strand at 429.508 kb on - strand at 429.508 kb on - strand at 429.522 kb on + strand at 429.522 kb on + strand at 429.523 kb on - strand at 429.523 kb on - strand at 429.527 kb on + strand at 429.528 kb on - strand at 429.531 kb on - strand at 429.531 kb on - strand at 429.565 kb on + strand at 429.566 kb on - strand at 429.597 kb on + strand at 429.612 kb on + strand at 429.620 kb on + strand at 429.621 kb on - strand at 429.624 kb on + strand at 429.676 kb on - strand, within dprA at 429.742 kb on + strand, within dprA at 429.743 kb on - strand, within dprA at 429.876 kb on + strand, within dprA at 429.981 kb on - strand, within dprA at 429.985 kb on - strand, within dprA
Per-strain Table
Position Strand Gene LocusTag Fraction Bas05 remove 427,511 + aroE BNILDI_02165 0.51 -0.8 427,514 + aroE BNILDI_02165 0.51 -0.7 427,553 - aroE BNILDI_02165 0.56 +0.6 427,553 - aroE BNILDI_02165 0.56 +0.1 427,605 - aroE BNILDI_02165 0.62 -1.2 427,661 - aroE BNILDI_02165 0.69 +2.4 427,661 - aroE BNILDI_02165 0.69 -1.3 427,819 - aroE BNILDI_02165 0.88 +0.8 427,905 + -0.5 427,905 + -0.2 428,530 - -0.5 428,727 + yrdD BNILDI_02175 0.42 -0.6 428,728 - yrdD BNILDI_02175 0.43 +1.4 428,728 - yrdD BNILDI_02175 0.43 -1.5 428,785 - yrdD BNILDI_02175 0.53 +0.3 428,821 + yrdD BNILDI_02175 0.60 -0.6 428,878 - yrdD BNILDI_02175 0.70 -0.1 428,913 - yrdD BNILDI_02175 0.77 -0.3 429,048 - +0.1 429,058 - +0.4 429,070 - +0.8 429,079 + -1.8 429,080 - -0.8 429,142 + smg BNILDI_02180 0.16 +0.2 429,164 + smg BNILDI_02180 0.20 +0.8 429,324 + smg BNILDI_02180 0.54 +0.0 429,328 + smg BNILDI_02180 0.55 -0.2 429,329 - smg BNILDI_02180 0.55 -0.6 429,420 + smg BNILDI_02180 0.74 -1.0 429,420 + smg BNILDI_02180 0.74 -1.1 429,421 - smg BNILDI_02180 0.74 -0.0 429,421 - smg BNILDI_02180 0.74 -0.4 429,424 + smg BNILDI_02180 0.75 -1.5 429,506 - -0.6 429,507 + -0.8 429,508 - +0.4 429,508 - -0.6 429,522 + +0.4 429,522 + +0.2 429,523 - +0.0 429,523 - -0.5 429,527 + -1.6 429,528 - +1.1 429,531 - -1.0 429,531 - +0.3 429,565 + -0.2 429,566 - -0.1 429,597 + -0.5 429,612 + -0.1 429,620 + -0.6 429,621 - +0.7 429,624 + -0.8 429,676 - dprA BNILDI_02185 0.14 +0.5 429,742 + dprA BNILDI_02185 0.20 -0.1 429,743 - dprA BNILDI_02185 0.20 +0.2 429,876 + dprA BNILDI_02185 0.32 -1.0 429,981 - dprA BNILDI_02185 0.42 -0.7 429,985 - dprA BNILDI_02185 0.42 +1.6
Or see this region's nucleotide sequence