Experiment: Bas05
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dcuC and sspB are separated by 42 nucleotides sspB and sspA are separated by 5 nucleotides sspA and rpsI are separated by 394 nucleotides rpsI and rplM are separated by 15 nucleotides
BNILDI_01895: dcuC - anaerobic C4-dicarboxylate transporter DcuC, at 372,217 to 373,584
dcuC
BNILDI_01900: sspB - ClpXP protease specificity-enhancing factor, at 373,627 to 374,124
sspB
BNILDI_01905: sspA - stringent starvation protein A, at 374,130 to 374,768
sspA
BNILDI_01910: rpsI - 30S ribosomal protein S9, at 375,163 to 375,555
rpsI
BNILDI_01915: rplM - 50S ribosomal protein L13, at 375,571 to 375,999
rplM
Position (kb) 374
375 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 373.191 kb on - strand, within dcuC at 373.284 kb on + strand, within dcuC at 373.359 kb on + strand, within dcuC at 373.360 kb on - strand, within dcuC at 373.360 kb on - strand, within dcuC at 373.382 kb on + strand, within dcuC at 373.383 kb on - strand, within dcuC at 373.383 kb on - strand, within dcuC at 373.383 kb on - strand, within dcuC at 373.383 kb on - strand, within dcuC at 373.383 kb on - strand, within dcuC at 373.383 kb on - strand, within dcuC at 373.400 kb on + strand, within dcuC at 373.400 kb on + strand, within dcuC at 373.582 kb on + strand at 373.590 kb on + strand at 373.591 kb on - strand at 373.626 kb on - strand at 373.642 kb on + strand at 373.738 kb on - strand, within sspB at 373.785 kb on + strand, within sspB at 373.844 kb on + strand, within sspB at 373.845 kb on - strand, within sspB at 373.849 kb on - strand, within sspB at 373.916 kb on - strand, within sspB at 373.991 kb on + strand, within sspB at 373.991 kb on + strand, within sspB at 374.073 kb on - strand, within sspB at 374.073 kb on - strand, within sspB at 374.073 kb on - strand, within sspB at 374.073 kb on - strand, within sspB at 374.073 kb on - strand, within sspB at 374.108 kb on - strand at 374.108 kb on - strand at 374.132 kb on - strand at 374.210 kb on + strand, within sspA at 374.210 kb on + strand, within sspA at 374.211 kb on - strand, within sspA at 374.438 kb on - strand, within sspA at 374.537 kb on - strand, within sspA at 374.667 kb on + strand, within sspA at 374.707 kb on + strand at 374.707 kb on + strand at 374.707 kb on + strand at 374.707 kb on + strand at 374.707 kb on + strand at 374.708 kb on - strand at 374.708 kb on - strand at 374.708 kb on - strand at 374.708 kb on - strand at 374.708 kb on - strand at 374.708 kb on - strand at 374.708 kb on - strand at 374.783 kb on - strand at 374.783 kb on - strand at 374.783 kb on - strand at 374.920 kb on + strand at 374.920 kb on + strand at 374.988 kb on - strand at 374.997 kb on + strand at 374.998 kb on - strand at 374.998 kb on - strand at 375.006 kb on + strand at 375.007 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas05 remove 373,191 - dcuC BNILDI_01895 0.71 -0.3 373,284 + dcuC BNILDI_01895 0.78 -1.0 373,359 + dcuC BNILDI_01895 0.83 -0.0 373,360 - dcuC BNILDI_01895 0.84 -0.4 373,360 - dcuC BNILDI_01895 0.84 -3.6 373,382 + dcuC BNILDI_01895 0.85 +0.6 373,383 - dcuC BNILDI_01895 0.85 -1.8 373,383 - dcuC BNILDI_01895 0.85 -0.5 373,383 - dcuC BNILDI_01895 0.85 -1.2 373,383 - dcuC BNILDI_01895 0.85 -0.2 373,383 - dcuC BNILDI_01895 0.85 +0.2 373,383 - dcuC BNILDI_01895 0.85 +0.0 373,400 + dcuC BNILDI_01895 0.86 -1.6 373,400 + dcuC BNILDI_01895 0.86 -0.3 373,582 + -1.1 373,590 + -0.6 373,591 - +2.4 373,626 - +0.4 373,642 + -0.7 373,738 - sspB BNILDI_01900 0.22 -1.4 373,785 + sspB BNILDI_01900 0.32 +0.4 373,844 + sspB BNILDI_01900 0.44 -0.4 373,845 - sspB BNILDI_01900 0.44 -0.3 373,849 - sspB BNILDI_01900 0.45 +0.9 373,916 - sspB BNILDI_01900 0.58 -0.0 373,991 + sspB BNILDI_01900 0.73 +0.3 373,991 + sspB BNILDI_01900 0.73 +1.1 374,073 - sspB BNILDI_01900 0.90 +1.2 374,073 - sspB BNILDI_01900 0.90 +1.1 374,073 - sspB BNILDI_01900 0.90 +0.0 374,073 - sspB BNILDI_01900 0.90 -0.7 374,073 - sspB BNILDI_01900 0.90 +0.2 374,108 - -0.6 374,108 - +1.0 374,132 - +0.3 374,210 + sspA BNILDI_01905 0.13 -1.0 374,210 + sspA BNILDI_01905 0.13 -2.7 374,211 - sspA BNILDI_01905 0.13 -0.6 374,438 - sspA BNILDI_01905 0.48 +0.4 374,537 - sspA BNILDI_01905 0.64 -0.4 374,667 + sspA BNILDI_01905 0.84 -0.8 374,707 + -1.7 374,707 + +0.2 374,707 + -2.1 374,707 + -0.9 374,707 + +2.1 374,708 - +0.4 374,708 - +0.2 374,708 - -0.7 374,708 - -0.1 374,708 - -1.6 374,708 - -0.4 374,708 - -1.0 374,783 - +2.4 374,783 - +1.5 374,783 - -0.9 374,920 + +2.4 374,920 + -1.4 374,988 - +0.4 374,997 + -0.3 374,998 - +0.0 374,998 - -1.9 375,006 + +0.2 375,007 - +2.1
Or see this region's nucleotide sequence