Experiment: Bas05
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mtr and deaD are separated by 153 nucleotides deaD and yrbN overlap by 8 nucleotides yrbN and nlpI are separated by 106 nucleotides
BNILDI_01575: mtr - tryptophan permease, at 309,094 to 310,338
mtr
BNILDI_01580: deaD - ATP-dependent RNA helicase DeaD, at 310,492 to 312,381
deaD
BNILDI_01585: yrbN - Uncharacterized protein YrbN, at 312,374 to 312,454
yrbN
BNILDI_01590: nlpI - lipoprotein NlpI, at 312,561 to 313,445
nlpI
Position (kb) 310
311
312
313 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 309.544 kb on - strand, within mtr at 309.544 kb on - strand, within mtr at 309.620 kb on + strand, within mtr at 309.620 kb on + strand, within mtr at 309.621 kb on - strand, within mtr at 309.642 kb on + strand, within mtr at 309.647 kb on + strand, within mtr at 309.689 kb on + strand, within mtr at 309.762 kb on - strand, within mtr at 309.770 kb on + strand, within mtr at 309.770 kb on + strand, within mtr at 309.770 kb on + strand, within mtr at 309.852 kb on + strand, within mtr at 309.900 kb on + strand, within mtr at 309.904 kb on - strand, within mtr at 310.020 kb on + strand, within mtr at 310.022 kb on + strand, within mtr at 310.023 kb on - strand, within mtr at 310.028 kb on + strand, within mtr at 310.028 kb on + strand, within mtr at 310.028 kb on + strand, within mtr at 310.028 kb on + strand, within mtr at 310.028 kb on + strand, within mtr at 310.029 kb on - strand, within mtr at 310.029 kb on - strand, within mtr at 310.040 kb on + strand, within mtr at 310.041 kb on - strand, within mtr at 310.189 kb on - strand, within mtr at 310.282 kb on - strand at 310.328 kb on - strand at 310.456 kb on - strand at 310.459 kb on - strand at 310.459 kb on - strand at 310.774 kb on - strand, within deaD at 310.872 kb on + strand, within deaD at 311.073 kb on + strand, within deaD at 311.174 kb on + strand, within deaD at 311.210 kb on - strand, within deaD at 311.210 kb on - strand, within deaD at 311.293 kb on - strand, within deaD at 311.293 kb on - strand, within deaD at 311.293 kb on - strand, within deaD at 311.295 kb on + strand, within deaD at 311.296 kb on - strand, within deaD at 311.296 kb on - strand, within deaD at 311.296 kb on - strand, within deaD at 311.396 kb on + strand, within deaD at 311.423 kb on + strand, within deaD at 311.424 kb on - strand, within deaD at 311.424 kb on - strand, within deaD at 311.428 kb on - strand, within deaD at 311.428 kb on - strand, within deaD at 311.428 kb on - strand, within deaD at 311.428 kb on - strand, within deaD at 311.672 kb on - strand, within deaD at 312.026 kb on - strand, within deaD at 312.071 kb on - strand, within deaD at 312.319 kb on - strand at 312.383 kb on + strand, within yrbN at 312.384 kb on - strand, within yrbN at 312.384 kb on - strand, within yrbN at 312.387 kb on - strand, within yrbN at 312.422 kb on + strand, within yrbN at 312.423 kb on - strand, within yrbN at 312.480 kb on - strand at 312.480 kb on - strand at 312.486 kb on - strand at 312.554 kb on - strand at 312.563 kb on - strand at 312.563 kb on - strand at 312.711 kb on + strand, within nlpI at 312.712 kb on - strand, within nlpI at 312.712 kb on - strand, within nlpI at 312.716 kb on - strand, within nlpI at 312.719 kb on - strand, within nlpI at 312.719 kb on - strand, within nlpI at 312.719 kb on - strand, within nlpI at 312.719 kb on - strand, within nlpI at 312.730 kb on + strand, within nlpI at 312.731 kb on - strand, within nlpI at 312.731 kb on - strand, within nlpI at 312.829 kb on + strand, within nlpI at 312.829 kb on + strand, within nlpI at 313.055 kb on - strand, within nlpI at 313.060 kb on + strand, within nlpI at 313.133 kb on - strand, within nlpI at 313.135 kb on - strand, within nlpI at 313.163 kb on + strand, within nlpI at 313.232 kb on - strand, within nlpI at 313.232 kb on - strand, within nlpI at 313.232 kb on - strand, within nlpI at 313.232 kb on - strand, within nlpI at 313.250 kb on - strand, within nlpI at 313.307 kb on + strand, within nlpI at 313.307 kb on + strand, within nlpI at 313.307 kb on + strand, within nlpI at 313.308 kb on - strand, within nlpI
Per-strain Table
Position Strand Gene LocusTag Fraction Bas05 remove 309,544 - mtr BNILDI_01575 0.36 +0.8 309,544 - mtr BNILDI_01575 0.36 -1.0 309,620 + mtr BNILDI_01575 0.42 -0.2 309,620 + mtr BNILDI_01575 0.42 -0.7 309,621 - mtr BNILDI_01575 0.42 +1.2 309,642 + mtr BNILDI_01575 0.44 -2.4 309,647 + mtr BNILDI_01575 0.44 +0.3 309,689 + mtr BNILDI_01575 0.48 +0.1 309,762 - mtr BNILDI_01575 0.54 -0.4 309,770 + mtr BNILDI_01575 0.54 -1.6 309,770 + mtr BNILDI_01575 0.54 +0.2 309,770 + mtr BNILDI_01575 0.54 -0.5 309,852 + mtr BNILDI_01575 0.61 -0.8 309,900 + mtr BNILDI_01575 0.65 -0.5 309,904 - mtr BNILDI_01575 0.65 +0.6 310,020 + mtr BNILDI_01575 0.74 -0.2 310,022 + mtr BNILDI_01575 0.75 +0.9 310,023 - mtr BNILDI_01575 0.75 +0.2 310,028 + mtr BNILDI_01575 0.75 +0.3 310,028 + mtr BNILDI_01575 0.75 +0.4 310,028 + mtr BNILDI_01575 0.75 -1.2 310,028 + mtr BNILDI_01575 0.75 +1.4 310,028 + mtr BNILDI_01575 0.75 +1.0 310,029 - mtr BNILDI_01575 0.75 -0.3 310,029 - mtr BNILDI_01575 0.75 +0.2 310,040 + mtr BNILDI_01575 0.76 +0.5 310,041 - mtr BNILDI_01575 0.76 +0.8 310,189 - mtr BNILDI_01575 0.88 -0.2 310,282 - -0.3 310,328 - +0.5 310,456 - -0.1 310,459 - +2.8 310,459 - -0.3 310,774 - deaD BNILDI_01580 0.15 -1.1 310,872 + deaD BNILDI_01580 0.20 -2.5 311,073 + deaD BNILDI_01580 0.31 -0.5 311,174 + deaD BNILDI_01580 0.36 -0.4 311,210 - deaD BNILDI_01580 0.38 -0.6 311,210 - deaD BNILDI_01580 0.38 -0.4 311,293 - deaD BNILDI_01580 0.42 -3.2 311,293 - deaD BNILDI_01580 0.42 -0.8 311,293 - deaD BNILDI_01580 0.42 -0.4 311,295 + deaD BNILDI_01580 0.42 -0.4 311,296 - deaD BNILDI_01580 0.43 -0.2 311,296 - deaD BNILDI_01580 0.43 -0.4 311,296 - deaD BNILDI_01580 0.43 -1.8 311,396 + deaD BNILDI_01580 0.48 -0.6 311,423 + deaD BNILDI_01580 0.49 -0.9 311,424 - deaD BNILDI_01580 0.49 -1.0 311,424 - deaD BNILDI_01580 0.49 -1.8 311,428 - deaD BNILDI_01580 0.50 -2.6 311,428 - deaD BNILDI_01580 0.50 -1.5 311,428 - deaD BNILDI_01580 0.50 -0.9 311,428 - deaD BNILDI_01580 0.50 -2.1 311,672 - deaD BNILDI_01580 0.62 -0.8 312,026 - deaD BNILDI_01580 0.81 -0.6 312,071 - deaD BNILDI_01580 0.84 -2.7 312,319 - -1.1 312,383 + yrbN BNILDI_01585 0.11 -1.5 312,384 - yrbN BNILDI_01585 0.12 -1.6 312,384 - yrbN BNILDI_01585 0.12 -0.4 312,387 - yrbN BNILDI_01585 0.16 +0.8 312,422 + yrbN BNILDI_01585 0.59 -0.6 312,423 - yrbN BNILDI_01585 0.60 +0.3 312,480 - -2.4 312,480 - -0.4 312,486 - -0.4 312,554 - +0.4 312,563 - -1.2 312,563 - -0.2 312,711 + nlpI BNILDI_01590 0.17 -0.4 312,712 - nlpI BNILDI_01590 0.17 +0.2 312,712 - nlpI BNILDI_01590 0.17 +0.3 312,716 - nlpI BNILDI_01590 0.18 +1.5 312,719 - nlpI BNILDI_01590 0.18 -1.7 312,719 - nlpI BNILDI_01590 0.18 +0.8 312,719 - nlpI BNILDI_01590 0.18 -0.6 312,719 - nlpI BNILDI_01590 0.18 +0.9 312,730 + nlpI BNILDI_01590 0.19 -1.4 312,731 - nlpI BNILDI_01590 0.19 +0.9 312,731 - nlpI BNILDI_01590 0.19 +0.1 312,829 + nlpI BNILDI_01590 0.30 -2.0 312,829 + nlpI BNILDI_01590 0.30 +1.4 313,055 - nlpI BNILDI_01590 0.56 -0.7 313,060 + nlpI BNILDI_01590 0.56 -0.2 313,133 - nlpI BNILDI_01590 0.65 +2.1 313,135 - nlpI BNILDI_01590 0.65 +1.3 313,163 + nlpI BNILDI_01590 0.68 -0.8 313,232 - nlpI BNILDI_01590 0.76 +0.0 313,232 - nlpI BNILDI_01590 0.76 -0.3 313,232 - nlpI BNILDI_01590 0.76 +0.4 313,232 - nlpI BNILDI_01590 0.76 +1.5 313,250 - nlpI BNILDI_01590 0.78 -2.1 313,307 + nlpI BNILDI_01590 0.84 +0.0 313,307 + nlpI BNILDI_01590 0.84 +1.6 313,307 + nlpI BNILDI_01590 0.84 -0.5 313,308 - nlpI BNILDI_01590 0.84 +0.2
Or see this region's nucleotide sequence