Experiment: Bas05
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yqiI and glgS are separated by 42 nucleotides glgS and yqiJ are separated by 268 nucleotides yqiJ and yqiK are separated by 26 nucleotides
BNILDI_00955: yqiI - Uncharacterized protein YqiI, at 184,294 to 185,358
yqiI
BNILDI_00960: glgS - cell surface composition regulator GlgS, at 185,401 to 185,601
glgS
BNILDI_00965: yqiJ - Inner membrane protein YqiJ, at 185,870 to 186,499
yqiJ
BNILDI_00970: yqiK - Flotillin family inner membrane protein YqiK, at 186,526 to 188,187
yqiK
Position (kb) 185
186
187 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 184.886 kb on + strand, within yqiI at 184.933 kb on - strand, within yqiI at 185.082 kb on + strand, within yqiI at 185.284 kb on - strand at 185.322 kb on + strand at 185.351 kb on - strand at 185.356 kb on + strand at 185.356 kb on + strand at 185.356 kb on + strand at 185.357 kb on - strand at 185.364 kb on - strand at 185.367 kb on - strand at 185.397 kb on + strand at 185.399 kb on + strand at 185.410 kb on + strand at 185.411 kb on - strand at 185.456 kb on + strand, within glgS at 185.478 kb on + strand, within glgS at 185.478 kb on + strand, within glgS at 185.478 kb on + strand, within glgS at 185.479 kb on - strand, within glgS at 185.479 kb on - strand, within glgS at 185.554 kb on - strand, within glgS at 185.593 kb on - strand at 185.633 kb on - strand at 185.641 kb on - strand at 185.686 kb on - strand at 185.691 kb on + strand at 185.869 kb on + strand at 185.891 kb on - strand at 185.922 kb on + strand at 185.923 kb on - strand at 186.285 kb on - strand, within yqiJ at 186.666 kb on - strand at 186.725 kb on + strand, within yqiK at 186.744 kb on + strand, within yqiK at 186.745 kb on - strand, within yqiK at 186.815 kb on + strand, within yqiK at 186.819 kb on - strand, within yqiK at 186.852 kb on - strand, within yqiK at 186.852 kb on - strand, within yqiK at 186.911 kb on + strand, within yqiK at 186.911 kb on + strand, within yqiK at 186.912 kb on - strand, within yqiK at 187.077 kb on + strand, within yqiK at 187.077 kb on + strand, within yqiK at 187.185 kb on + strand, within yqiK at 187.279 kb on - strand, within yqiK at 187.473 kb on + strand, within yqiK
Per-strain Table
Position Strand Gene LocusTag Fraction Bas05 remove 184,886 + yqiI BNILDI_00955 0.56 -0.7 184,933 - yqiI BNILDI_00955 0.60 -3.0 185,082 + yqiI BNILDI_00955 0.74 -0.0 185,284 - +1.8 185,322 + +0.7 185,351 - +1.0 185,356 + -0.7 185,356 + -2.5 185,356 + +0.1 185,357 - -0.7 185,364 - +0.1 185,367 - +0.2 185,397 + +0.5 185,399 + -1.1 185,410 + +0.4 185,411 - -0.1 185,456 + glgS BNILDI_00960 0.27 -0.8 185,478 + glgS BNILDI_00960 0.38 +0.2 185,478 + glgS BNILDI_00960 0.38 +0.2 185,478 + glgS BNILDI_00960 0.38 -0.3 185,479 - glgS BNILDI_00960 0.39 +0.7 185,479 - glgS BNILDI_00960 0.39 +0.4 185,554 - glgS BNILDI_00960 0.76 -0.1 185,593 - -0.9 185,633 - -0.2 185,641 - -1.0 185,686 - +0.4 185,691 + +0.3 185,869 + -0.1 185,891 - -0.1 185,922 + +0.3 185,923 - +0.3 186,285 - yqiJ BNILDI_00965 0.66 -1.3 186,666 - +1.4 186,725 + yqiK BNILDI_00970 0.12 -1.3 186,744 + yqiK BNILDI_00970 0.13 +1.2 186,745 - yqiK BNILDI_00970 0.13 -0.9 186,815 + yqiK BNILDI_00970 0.17 -0.1 186,819 - yqiK BNILDI_00970 0.18 +0.4 186,852 - yqiK BNILDI_00970 0.20 +0.3 186,852 - yqiK BNILDI_00970 0.20 -0.2 186,911 + yqiK BNILDI_00970 0.23 +0.3 186,911 + yqiK BNILDI_00970 0.23 +0.5 186,912 - yqiK BNILDI_00970 0.23 +0.0 187,077 + yqiK BNILDI_00970 0.33 -1.0 187,077 + yqiK BNILDI_00970 0.33 -0.2 187,185 + yqiK BNILDI_00970 0.40 -0.9 187,279 - yqiK BNILDI_00970 0.45 +0.1 187,473 + yqiK BNILDI_00970 0.57 +0.1
Or see this region's nucleotide sequence