Strain Fitness in Escherichia coli ECRC62 around BNILDI_00935

Experiment: Bas05

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntribB and ubiK are separated by 373 nucleotidesubiK and ygiL are separated by 282 nucleotidesygiL and yqiG are separated by 50 nucleotides BNILDI_00930: ribB - 3,4-dihydroxy-2-butanone 4-phosphate synthase, at 178,812 to 179,465 ribB BNILDI_00935: ubiK - ubiquinone biosynthesis accessory factor UbiK, at 179,839 to 180,129 ubiK BNILDI_00940: ygiL - fimbrial-like protein, at 180,412 to 180,963 ygiL BNILDI_00945: yqiG - Putative outer membrane usher protein YqiG, at 181,014 to 183,527 yqiG Position (kb) 179 180 181Strain fitness (log2 ratio) -2 -1 0 1at 179.495 kb on - strandat 179.757 kb on + strandat 179.757 kb on + strandat 179.758 kb on - strandat 179.835 kb on + strandat 179.836 kb on - strandat 179.978 kb on + strand, within ubiKat 179.979 kb on - strand, within ubiKat 180.191 kb on + strandat 180.540 kb on + strand, within ygiLat 180.634 kb on - strand, within ygiLat 180.837 kb on - strand, within ygiLat 180.853 kb on - strand, within ygiLat 180.862 kb on + strand, within ygiLat 180.862 kb on + strand, within ygiLat 180.945 kb on + strandat 181.026 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas05
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179,495 - -0.3
179,757 + -0.6
179,757 + -0.4
179,758 - +1.1
179,835 + -2.0
179,836 - -0.5
179,978 + ubiK BNILDI_00935 0.48 -0.6
179,979 - ubiK BNILDI_00935 0.48 -1.4
180,191 + -0.3
180,540 + ygiL BNILDI_00940 0.23 +0.1
180,634 - ygiL BNILDI_00940 0.40 +0.8
180,837 - ygiL BNILDI_00940 0.77 -0.1
180,853 - ygiL BNILDI_00940 0.80 -0.4
180,862 + ygiL BNILDI_00940 0.82 +0.0
180,862 + ygiL BNILDI_00940 0.82 -0.4
180,945 + -0.1
181,026 + -2.2

Or see this region's nucleotide sequence