Experiment: Bas05
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ygiW and BNILDI_00855 are separated by 151 nucleotides BNILDI_00855 and qseC overlap by 4 nucleotides qseC and ygiZ are separated by 45 nucleotides ygiZ and mdaB are separated by 318 nucleotides
BNILDI_00850: ygiW - OB fold stress tolerance protein YgiW, at 164,284 to 164,676
ygiW
BNILDI_00855: BNILDI_00855 - Transcriptional regulatory protein QseB, at 164,828 to 165,487
_00855
BNILDI_00860: qseC - two-component system sensor histidine kinase QseC, at 165,484 to 166,833
qseC
BNILDI_00865: ygiZ - Inner membrane protein YgiZ, at 166,879 to 167,211
ygiZ
BNILDI_00870: mdaB - NADPH:quinone oxidoreductase MdaB, at 167,530 to 168,111
mdaB
Position (kb) 165
166
167 Strain fitness (log2 ratio) -2
-1
0
1
2 at 164.530 kb on + strand, within ygiW at 164.680 kb on + strand at 164.683 kb on + strand at 164.692 kb on + strand at 164.713 kb on + strand at 164.768 kb on - strand at 164.844 kb on + strand at 164.845 kb on - strand at 164.948 kb on + strand, within BNILDI_00855 at 164.982 kb on + strand, within BNILDI_00855 at 164.988 kb on + strand, within BNILDI_00855 at 164.989 kb on - strand, within BNILDI_00855 at 165.144 kb on + strand, within BNILDI_00855 at 165.144 kb on + strand, within BNILDI_00855 at 165.144 kb on + strand, within BNILDI_00855 at 165.218 kb on - strand, within BNILDI_00855 at 165.362 kb on + strand, within BNILDI_00855 at 165.363 kb on - strand, within BNILDI_00855 at 165.460 kb on + strand at 165.461 kb on - strand at 165.474 kb on + strand at 165.475 kb on - strand at 165.475 kb on - strand at 165.504 kb on + strand at 165.648 kb on - strand, within qseC at 165.710 kb on + strand, within qseC at 165.804 kb on + strand, within qseC at 165.804 kb on + strand, within qseC at 165.813 kb on + strand, within qseC at 165.813 kb on + strand, within qseC at 165.813 kb on + strand, within qseC at 165.813 kb on + strand, within qseC at 165.813 kb on + strand, within qseC at 165.818 kb on - strand, within qseC at 165.818 kb on - strand, within qseC at 165.818 kb on - strand, within qseC at 166.022 kb on + strand, within qseC at 166.025 kb on + strand, within qseC at 166.203 kb on + strand, within qseC at 166.203 kb on + strand, within qseC at 166.226 kb on + strand, within qseC at 166.227 kb on - strand, within qseC at 166.230 kb on + strand, within qseC at 166.456 kb on + strand, within qseC at 166.456 kb on + strand, within qseC at 166.541 kb on + strand, within qseC at 166.541 kb on + strand, within qseC at 166.541 kb on + strand, within qseC at 166.823 kb on + strand at 166.831 kb on + strand at 166.832 kb on - strand at 166.845 kb on - strand at 166.877 kb on + strand at 166.880 kb on + strand at 166.880 kb on + strand at 167.005 kb on - strand, within ygiZ at 167.077 kb on + strand, within ygiZ at 167.164 kb on + strand, within ygiZ at 167.492 kb on + strand at 167.492 kb on + strand at 167.493 kb on - strand at 167.495 kb on + strand at 167.495 kb on + strand at 167.495 kb on + strand at 167.495 kb on + strand at 167.497 kb on + strand at 167.772 kb on + strand, within mdaB at 167.773 kb on - strand, within mdaB at 167.783 kb on + strand, within mdaB at 167.783 kb on + strand, within mdaB
Per-strain Table
Position Strand Gene LocusTag Fraction Bas05 remove 164,530 + ygiW BNILDI_00850 0.63 +2.1 164,680 + +1.3 164,683 + -1.4 164,692 + +0.4 164,713 + +0.1 164,768 - +0.0 164,844 + -0.2 164,845 - +0.4 164,948 + BNILDI_00855 0.18 -0.4 164,982 + BNILDI_00855 0.23 -0.7 164,988 + BNILDI_00855 0.24 +0.3 164,989 - BNILDI_00855 0.24 -2.1 165,144 + BNILDI_00855 0.48 -0.4 165,144 + BNILDI_00855 0.48 +0.3 165,144 + BNILDI_00855 0.48 -0.8 165,218 - BNILDI_00855 0.59 +0.4 165,362 + BNILDI_00855 0.81 -0.9 165,363 - BNILDI_00855 0.81 +0.1 165,460 + +0.4 165,461 - -0.2 165,474 + +0.7 165,475 - -1.1 165,475 - -2.6 165,504 + -0.7 165,648 - qseC BNILDI_00860 0.12 -1.7 165,710 + qseC BNILDI_00860 0.17 -2.2 165,804 + qseC BNILDI_00860 0.24 -1.2 165,804 + qseC BNILDI_00860 0.24 -1.2 165,813 + qseC BNILDI_00860 0.24 -1.6 165,813 + qseC BNILDI_00860 0.24 -0.2 165,813 + qseC BNILDI_00860 0.24 +0.8 165,813 + qseC BNILDI_00860 0.24 -0.9 165,813 + qseC BNILDI_00860 0.24 +1.4 165,818 - qseC BNILDI_00860 0.25 -0.8 165,818 - qseC BNILDI_00860 0.25 -1.6 165,818 - qseC BNILDI_00860 0.25 -2.7 166,022 + qseC BNILDI_00860 0.40 -0.2 166,025 + qseC BNILDI_00860 0.40 -1.4 166,203 + qseC BNILDI_00860 0.53 -1.6 166,203 + qseC BNILDI_00860 0.53 +2.4 166,226 + qseC BNILDI_00860 0.55 -0.5 166,227 - qseC BNILDI_00860 0.55 +2.0 166,230 + qseC BNILDI_00860 0.55 -1.5 166,456 + qseC BNILDI_00860 0.72 -1.5 166,456 + qseC BNILDI_00860 0.72 -0.3 166,541 + qseC BNILDI_00860 0.78 +0.8 166,541 + qseC BNILDI_00860 0.78 +1.4 166,541 + qseC BNILDI_00860 0.78 -0.4 166,823 + +1.6 166,831 + -1.4 166,832 - -0.9 166,845 - -0.1 166,877 + +0.2 166,880 + -0.4 166,880 + -0.4 167,005 - ygiZ BNILDI_00865 0.38 +2.1 167,077 + ygiZ BNILDI_00865 0.59 +1.0 167,164 + ygiZ BNILDI_00865 0.86 +1.3 167,492 + +0.4 167,492 + +0.4 167,493 - -0.2 167,495 + +0.9 167,495 + +0.1 167,495 + -0.5 167,495 + -0.6 167,497 + +1.4 167,772 + mdaB BNILDI_00870 0.42 -0.1 167,773 - mdaB BNILDI_00870 0.42 +0.1 167,783 + mdaB BNILDI_00870 0.43 +0.1 167,783 + mdaB BNILDI_00870 0.43 -0.0
Or see this region's nucleotide sequence