Experiment: Bas05
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yghA and exbD are separated by 271 nucleotides exbD and exbB are separated by 6 nucleotides exbB and metC are separated by 251 nucleotides
BNILDI_00760: yghA - NADP(+)-dependent aldehyde reductase, at 146,893 to 147,777
yghA
BNILDI_00770: exbD - TonB system transport protein ExbD, at 148,049 to 148,474
exbD
BNILDI_00775: exbB - tol-pal system-associated acyl-CoA thioesterase, at 148,481 to 149,215
exbB
BNILDI_00780: metC - cystathionine beta-lyase, at 149,467 to 150,654
metC
Position (kb)
148
149 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 147.075 kb on - strand, within yghA at 147.130 kb on + strand, within yghA at 147.130 kb on + strand, within yghA at 147.282 kb on + strand, within yghA at 147.283 kb on - strand, within yghA at 147.432 kb on + strand, within yghA at 147.432 kb on + strand, within yghA at 147.433 kb on - strand, within yghA at 147.460 kb on + strand, within yghA at 147.461 kb on - strand, within yghA at 147.517 kb on + strand, within yghA at 147.517 kb on + strand, within yghA at 147.567 kb on + strand, within yghA at 147.627 kb on + strand, within yghA at 147.628 kb on - strand, within yghA at 147.695 kb on + strand at 147.696 kb on - strand at 147.696 kb on - strand at 147.696 kb on - strand at 147.696 kb on - strand at 147.696 kb on - strand at 147.697 kb on + strand at 147.697 kb on + strand at 147.697 kb on + strand at 147.698 kb on - strand at 147.698 kb on - strand at 147.698 kb on - strand at 147.698 kb on - strand at 147.698 kb on - strand at 147.698 kb on - strand at 147.698 kb on - strand at 147.703 kb on + strand at 147.703 kb on + strand at 147.703 kb on + strand at 147.704 kb on - strand at 147.704 kb on - strand at 147.704 kb on - strand at 147.727 kb on + strand at 147.727 kb on + strand at 147.727 kb on + strand at 147.727 kb on + strand at 147.728 kb on - strand at 147.770 kb on + strand at 147.770 kb on + strand at 147.770 kb on + strand at 147.771 kb on - strand at 147.771 kb on - strand at 148.008 kb on - strand at 148.050 kb on + strand at 148.347 kb on - strand, within exbD at 148.379 kb on - strand, within exbD at 148.423 kb on + strand, within exbD at 148.424 kb on - strand, within exbD at 148.424 kb on - strand, within exbD at 148.482 kb on + strand at 148.569 kb on - strand, within exbB at 148.569 kb on - strand, within exbB at 148.625 kb on + strand, within exbB at 148.626 kb on - strand, within exbB at 148.632 kb on + strand, within exbB at 148.632 kb on + strand, within exbB at 148.633 kb on - strand, within exbB at 148.633 kb on - strand, within exbB at 148.633 kb on - strand, within exbB at 148.633 kb on - strand, within exbB at 148.633 kb on - strand, within exbB at 148.679 kb on + strand, within exbB at 148.885 kb on + strand, within exbB at 148.886 kb on - strand, within exbB at 148.886 kb on - strand, within exbB at 148.897 kb on + strand, within exbB at 149.078 kb on + strand, within exbB at 149.079 kb on - strand, within exbB at 149.079 kb on - strand, within exbB at 149.147 kb on - strand at 149.169 kb on + strand at 149.170 kb on - strand at 149.170 kb on - strand at 149.173 kb on + strand at 149.206 kb on + strand at 149.220 kb on + strand at 149.221 kb on - strand at 149.253 kb on + strand at 149.253 kb on + strand at 149.254 kb on - strand at 149.256 kb on + strand at 149.256 kb on + strand at 149.257 kb on - strand at 149.257 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas05 remove 147,075 - yghA BNILDI_00760 0.21 +1.5 147,130 + yghA BNILDI_00760 0.27 +2.1 147,130 + yghA BNILDI_00760 0.27 +0.9 147,282 + yghA BNILDI_00760 0.44 +1.0 147,283 - yghA BNILDI_00760 0.44 +0.9 147,432 + yghA BNILDI_00760 0.61 -0.3 147,432 + yghA BNILDI_00760 0.61 +0.4 147,433 - yghA BNILDI_00760 0.61 -1.6 147,460 + yghA BNILDI_00760 0.64 -1.0 147,461 - yghA BNILDI_00760 0.64 -0.5 147,517 + yghA BNILDI_00760 0.71 -1.3 147,517 + yghA BNILDI_00760 0.71 -0.8 147,567 + yghA BNILDI_00760 0.76 +0.3 147,627 + yghA BNILDI_00760 0.83 -0.3 147,628 - yghA BNILDI_00760 0.83 +0.1 147,695 + -0.1 147,696 - -0.6 147,696 - -0.7 147,696 - -0.1 147,696 - -0.1 147,696 - -0.9 147,697 + -1.6 147,697 + -0.7 147,697 + +0.5 147,698 - +0.3 147,698 - -0.6 147,698 - -1.3 147,698 - -0.1 147,698 - +0.1 147,698 - +0.1 147,698 - +0.4 147,703 + -0.2 147,703 + -0.2 147,703 + +0.6 147,704 - -0.3 147,704 - +2.1 147,704 - +1.2 147,727 + -1.1 147,727 + +0.2 147,727 + +2.7 147,727 + +1.8 147,728 - -0.6 147,770 + -0.4 147,770 + -0.0 147,770 + -1.1 147,771 - -0.1 147,771 - +0.1 148,008 - +0.1 148,050 + +0.5 148,347 - exbD BNILDI_00770 0.70 +0.6 148,379 - exbD BNILDI_00770 0.77 -0.0 148,423 + exbD BNILDI_00770 0.88 -0.7 148,424 - exbD BNILDI_00770 0.88 -1.4 148,424 - exbD BNILDI_00770 0.88 -0.8 148,482 + +1.2 148,569 - exbB BNILDI_00775 0.12 +1.8 148,569 - exbB BNILDI_00775 0.12 -0.1 148,625 + exbB BNILDI_00775 0.20 +0.8 148,626 - exbB BNILDI_00775 0.20 -0.8 148,632 + exbB BNILDI_00775 0.21 +0.5 148,632 + exbB BNILDI_00775 0.21 -1.4 148,633 - exbB BNILDI_00775 0.21 +0.5 148,633 - exbB BNILDI_00775 0.21 -0.9 148,633 - exbB BNILDI_00775 0.21 +1.1 148,633 - exbB BNILDI_00775 0.21 +0.8 148,633 - exbB BNILDI_00775 0.21 -1.4 148,679 + exbB BNILDI_00775 0.27 +1.3 148,885 + exbB BNILDI_00775 0.55 -0.7 148,886 - exbB BNILDI_00775 0.55 +0.2 148,886 - exbB BNILDI_00775 0.55 -0.2 148,897 + exbB BNILDI_00775 0.57 -0.5 149,078 + exbB BNILDI_00775 0.81 -0.5 149,079 - exbB BNILDI_00775 0.81 -0.7 149,079 - exbB BNILDI_00775 0.81 +0.6 149,147 - -0.4 149,169 + +0.0 149,170 - -2.4 149,170 - -0.3 149,173 + +0.5 149,206 + -0.1 149,220 + -0.7 149,221 - -2.1 149,253 + +0.7 149,253 + +1.4 149,254 - -0.3 149,256 + +0.1 149,256 + -0.8 149,257 - -1.3 149,257 - -0.4
Or see this region's nucleotide sequence