Strain Fitness in Escherichia coli ECRC62 around BNILDI_00770

Experiment: Bas05

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntyghA and exbD are separated by 271 nucleotidesexbD and exbB are separated by 6 nucleotidesexbB and metC are separated by 251 nucleotides BNILDI_00760: yghA - NADP(+)-dependent aldehyde reductase, at 146,893 to 147,777 yghA BNILDI_00770: exbD - TonB system transport protein ExbD, at 148,049 to 148,474 exbD BNILDI_00775: exbB - tol-pal system-associated acyl-CoA thioesterase, at 148,481 to 149,215 exbB BNILDI_00780: metC - cystathionine beta-lyase, at 149,467 to 150,654 metC Position (kb) 148 149Strain fitness (log2 ratio) -2 -1 0 1 2at 147.075 kb on - strand, within yghAat 147.130 kb on + strand, within yghAat 147.130 kb on + strand, within yghAat 147.282 kb on + strand, within yghAat 147.283 kb on - strand, within yghAat 147.432 kb on + strand, within yghAat 147.432 kb on + strand, within yghAat 147.433 kb on - strand, within yghAat 147.460 kb on + strand, within yghAat 147.461 kb on - strand, within yghAat 147.517 kb on + strand, within yghAat 147.517 kb on + strand, within yghAat 147.567 kb on + strand, within yghAat 147.627 kb on + strand, within yghAat 147.628 kb on - strand, within yghAat 147.695 kb on + strandat 147.696 kb on - strandat 147.696 kb on - strandat 147.696 kb on - strandat 147.696 kb on - strandat 147.696 kb on - strandat 147.697 kb on + strandat 147.697 kb on + strandat 147.697 kb on + strandat 147.698 kb on - strandat 147.698 kb on - strandat 147.698 kb on - strandat 147.698 kb on - strandat 147.698 kb on - strandat 147.698 kb on - strandat 147.698 kb on - strandat 147.703 kb on + strandat 147.703 kb on + strandat 147.703 kb on + strandat 147.704 kb on - strandat 147.704 kb on - strandat 147.704 kb on - strandat 147.727 kb on + strandat 147.727 kb on + strandat 147.727 kb on + strandat 147.727 kb on + strandat 147.728 kb on - strandat 147.770 kb on + strandat 147.770 kb on + strandat 147.770 kb on + strandat 147.771 kb on - strandat 147.771 kb on - strandat 148.008 kb on - strandat 148.050 kb on + strandat 148.347 kb on - strand, within exbDat 148.379 kb on - strand, within exbDat 148.423 kb on + strand, within exbDat 148.424 kb on - strand, within exbDat 148.424 kb on - strand, within exbDat 148.482 kb on + strandat 148.569 kb on - strand, within exbBat 148.569 kb on - strand, within exbBat 148.625 kb on + strand, within exbBat 148.626 kb on - strand, within exbBat 148.632 kb on + strand, within exbBat 148.632 kb on + strand, within exbBat 148.633 kb on - strand, within exbBat 148.633 kb on - strand, within exbBat 148.633 kb on - strand, within exbBat 148.633 kb on - strand, within exbBat 148.633 kb on - strand, within exbBat 148.679 kb on + strand, within exbBat 148.885 kb on + strand, within exbBat 148.886 kb on - strand, within exbBat 148.886 kb on - strand, within exbBat 148.897 kb on + strand, within exbBat 149.078 kb on + strand, within exbBat 149.079 kb on - strand, within exbBat 149.079 kb on - strand, within exbBat 149.147 kb on - strandat 149.169 kb on + strandat 149.170 kb on - strandat 149.170 kb on - strandat 149.173 kb on + strandat 149.206 kb on + strandat 149.220 kb on + strandat 149.221 kb on - strandat 149.253 kb on + strandat 149.253 kb on + strandat 149.254 kb on - strandat 149.256 kb on + strandat 149.256 kb on + strandat 149.257 kb on - strandat 149.257 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas05
remove
147,075 - yghA BNILDI_00760 0.21 +1.5
147,130 + yghA BNILDI_00760 0.27 +2.1
147,130 + yghA BNILDI_00760 0.27 +0.9
147,282 + yghA BNILDI_00760 0.44 +1.0
147,283 - yghA BNILDI_00760 0.44 +0.9
147,432 + yghA BNILDI_00760 0.61 -0.3
147,432 + yghA BNILDI_00760 0.61 +0.4
147,433 - yghA BNILDI_00760 0.61 -1.6
147,460 + yghA BNILDI_00760 0.64 -1.0
147,461 - yghA BNILDI_00760 0.64 -0.5
147,517 + yghA BNILDI_00760 0.71 -1.3
147,517 + yghA BNILDI_00760 0.71 -0.8
147,567 + yghA BNILDI_00760 0.76 +0.3
147,627 + yghA BNILDI_00760 0.83 -0.3
147,628 - yghA BNILDI_00760 0.83 +0.1
147,695 + -0.1
147,696 - -0.6
147,696 - -0.7
147,696 - -0.1
147,696 - -0.1
147,696 - -0.9
147,697 + -1.6
147,697 + -0.7
147,697 + +0.5
147,698 - +0.3
147,698 - -0.6
147,698 - -1.3
147,698 - -0.1
147,698 - +0.1
147,698 - +0.1
147,698 - +0.4
147,703 + -0.2
147,703 + -0.2
147,703 + +0.6
147,704 - -0.3
147,704 - +2.1
147,704 - +1.2
147,727 + -1.1
147,727 + +0.2
147,727 + +2.7
147,727 + +1.8
147,728 - -0.6
147,770 + -0.4
147,770 + -0.0
147,770 + -1.1
147,771 - -0.1
147,771 - +0.1
148,008 - +0.1
148,050 + +0.5
148,347 - exbD BNILDI_00770 0.70 +0.6
148,379 - exbD BNILDI_00770 0.77 -0.0
148,423 + exbD BNILDI_00770 0.88 -0.7
148,424 - exbD BNILDI_00770 0.88 -1.4
148,424 - exbD BNILDI_00770 0.88 -0.8
148,482 + +1.2
148,569 - exbB BNILDI_00775 0.12 +1.8
148,569 - exbB BNILDI_00775 0.12 -0.1
148,625 + exbB BNILDI_00775 0.20 +0.8
148,626 - exbB BNILDI_00775 0.20 -0.8
148,632 + exbB BNILDI_00775 0.21 +0.5
148,632 + exbB BNILDI_00775 0.21 -1.4
148,633 - exbB BNILDI_00775 0.21 +0.5
148,633 - exbB BNILDI_00775 0.21 -0.9
148,633 - exbB BNILDI_00775 0.21 +1.1
148,633 - exbB BNILDI_00775 0.21 +0.8
148,633 - exbB BNILDI_00775 0.21 -1.4
148,679 + exbB BNILDI_00775 0.27 +1.3
148,885 + exbB BNILDI_00775 0.55 -0.7
148,886 - exbB BNILDI_00775 0.55 +0.2
148,886 - exbB BNILDI_00775 0.55 -0.2
148,897 + exbB BNILDI_00775 0.57 -0.5
149,078 + exbB BNILDI_00775 0.81 -0.5
149,079 - exbB BNILDI_00775 0.81 -0.7
149,079 - exbB BNILDI_00775 0.81 +0.6
149,147 - -0.4
149,169 + +0.0
149,170 - -2.4
149,170 - -0.3
149,173 + +0.5
149,206 + -0.1
149,220 + -0.7
149,221 - -2.1
149,253 + +0.7
149,253 + +1.4
149,254 - -0.3
149,256 + +0.1
149,256 + -0.8
149,257 - -1.3
149,257 - -0.4

Or see this region's nucleotide sequence