Experiment: Community=Kojac gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF88 and GFF89 are separated by 5 nucleotides GFF89 and GFF90 are separated by 61 nucleotides GFF90 and GFF91 are separated by 57 nucleotides
GFF88 - Probable poly(beta-D-mannuronate) O-acetylase (EC 2.3.1.-), at 103,876 to 105,270
GFF88
GFF89 - hypothetical protein, at 105,276 to 106,388
GFF89
GFF90 - Arsenate reductase (EC 1.20.4.1), at 106,450 to 106,944
GFF90
GFF91 - General secretion pathway protein J, at 107,002 to 107,619
GFF91
Position (kb) 105
106
107 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 104.335 kb on + strand, within GFF88 at 104.335 kb on + strand, within GFF88 at 104.335 kb on + strand, within GFF88 at 104.335 kb on + strand, within GFF88 at 104.336 kb on - strand, within GFF88 at 104.336 kb on - strand, within GFF88 at 104.336 kb on - strand, within GFF88 at 104.336 kb on - strand, within GFF88 at 104.569 kb on + strand, within GFF88 at 104.570 kb on - strand, within GFF88 at 104.570 kb on - strand, within GFF88 at 104.604 kb on + strand, within GFF88 at 104.604 kb on + strand, within GFF88 at 104.712 kb on + strand, within GFF88 at 104.712 kb on + strand, within GFF88 at 104.712 kb on + strand, within GFF88 at 104.713 kb on - strand, within GFF88 at 104.713 kb on - strand, within GFF88 at 104.713 kb on - strand, within GFF88 at 104.713 kb on - strand, within GFF88 at 104.740 kb on + strand, within GFF88 at 104.741 kb on - strand, within GFF88 at 104.741 kb on - strand, within GFF88 at 104.746 kb on + strand, within GFF88 at 104.857 kb on + strand, within GFF88 at 104.943 kb on + strand, within GFF88 at 105.100 kb on + strand, within GFF88 at 105.100 kb on + strand, within GFF88 at 105.101 kb on - strand, within GFF88 at 105.256 kb on + strand at 105.256 kb on + strand at 105.257 kb on - strand at 105.432 kb on - strand, within GFF89 at 105.710 kb on + strand, within GFF89 at 106.460 kb on + strand at 106.460 kb on + strand at 106.460 kb on + strand at 106.461 kb on - strand at 106.461 kb on - strand at 106.955 kb on + strand at 106.955 kb on + strand at 106.957 kb on + strand at 106.957 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4 remove 104,335 + GFF88 0.33 -1.6 104,335 + GFF88 0.33 +1.4 104,335 + GFF88 0.33 -2.0 104,335 + GFF88 0.33 -2.8 104,336 - GFF88 0.33 -0.0 104,336 - GFF88 0.33 -0.3 104,336 - GFF88 0.33 -0.1 104,336 - GFF88 0.33 +1.8 104,569 + GFF88 0.50 -2.1 104,570 - GFF88 0.50 -1.9 104,570 - GFF88 0.50 +1.8 104,604 + GFF88 0.52 -0.4 104,604 + GFF88 0.52 +1.1 104,712 + GFF88 0.60 -0.7 104,712 + GFF88 0.60 +0.1 104,712 + GFF88 0.60 -1.5 104,713 - GFF88 0.60 -1.8 104,713 - GFF88 0.60 +0.1 104,713 - GFF88 0.60 -0.3 104,713 - GFF88 0.60 +1.1 104,740 + GFF88 0.62 -0.3 104,741 - GFF88 0.62 -0.6 104,741 - GFF88 0.62 -2.5 104,746 + GFF88 0.62 -0.2 104,857 + GFF88 0.70 -1.8 104,943 + GFF88 0.76 +0.8 105,100 + GFF88 0.88 -1.8 105,100 + GFF88 0.88 -0.6 105,101 - GFF88 0.88 -3.2 105,256 + -2.7 105,256 + +0.7 105,257 - +1.0 105,432 - GFF89 0.14 -0.5 105,710 + GFF89 0.39 -4.0 106,460 + +1.5 106,460 + -0.2 106,460 + -0.7 106,461 - -0.9 106,461 - -2.0 106,955 + -3.4 106,955 + +2.3 106,957 + -0.7 106,957 + +2.2
Or see this region's nucleotide sequence