Experiment: Community=Kojac gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF861 and GFF862 are separated by 11 nucleotides GFF862 and GFF863 overlap by 4 nucleotides GFF863 and GFF864 overlap by 4 nucleotides
GFF861 - S-adenosylhomocysteine deaminase (EC 3.5.4.28); Methylthioadenosine deaminase, at 168,094 to 169,617
GFF861
GFF862 - hypothetical protein, at 169,629 to 170,531
GFF862
GFF863 - KEGG: simple sugar transport system permease protein, at 170,528 to 171,562
GFF863
GFF864 - no description, at 171,559 to 173,121
GFF864
Position (kb) 170
171
172 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 169.574 kb on - strand at 169.696 kb on - strand at 169.696 kb on - strand at 169.759 kb on + strand, within GFF862 at 169.760 kb on - strand, within GFF862 at 169.760 kb on - strand, within GFF862 at 170.210 kb on - strand, within GFF862 at 170.210 kb on - strand, within GFF862 at 170.482 kb on + strand at 170.482 kb on + strand at 170.482 kb on + strand at 170.482 kb on + strand at 170.482 kb on + strand at 170.483 kb on - strand at 170.649 kb on + strand, within GFF863 at 170.650 kb on - strand, within GFF863 at 170.650 kb on - strand, within GFF863 at 171.099 kb on + strand, within GFF863 at 171.099 kb on + strand, within GFF863 at 171.099 kb on + strand, within GFF863 at 171.099 kb on + strand, within GFF863 at 171.100 kb on - strand, within GFF863 at 171.100 kb on - strand, within GFF863 at 171.100 kb on - strand, within GFF863 at 171.100 kb on - strand, within GFF863 at 171.303 kb on + strand, within GFF863 at 171.304 kb on - strand, within GFF863 at 171.304 kb on - strand, within GFF863 at 171.750 kb on - strand, within GFF864 at 171.750 kb on - strand, within GFF864
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4 remove 169,574 - -2.4 169,696 - +0.2 169,696 - -3.1 169,759 + GFF862 0.14 -0.4 169,760 - GFF862 0.15 -0.7 169,760 - GFF862 0.15 -2.8 170,210 - GFF862 0.64 -0.3 170,210 - GFF862 0.64 -0.1 170,482 + +0.5 170,482 + +0.0 170,482 + -1.4 170,482 + +0.8 170,482 + -1.8 170,483 - +1.2 170,649 + GFF863 0.12 -0.4 170,650 - GFF863 0.12 +1.3 170,650 - GFF863 0.12 -1.8 171,099 + GFF863 0.55 +2.4 171,099 + GFF863 0.55 +0.9 171,099 + GFF863 0.55 +0.3 171,099 + GFF863 0.55 +0.5 171,100 - GFF863 0.55 +0.1 171,100 - GFF863 0.55 -0.9 171,100 - GFF863 0.55 -0.4 171,100 - GFF863 0.55 -1.9 171,303 + GFF863 0.75 -2.2 171,304 - GFF863 0.75 +0.7 171,304 - GFF863 0.75 -1.7 171,750 - GFF864 0.12 -0.5 171,750 - GFF864 0.12 -1.8
Or see this region's nucleotide sequence