Experiment: Community=Kojac gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF844 and GFF845 are separated by 90 nucleotides GFF845 and GFF846 overlap by 4 nucleotides GFF846 and GFF847 are separated by 16 nucleotides GFF847 and GFF848 are separated by 19 nucleotides
GFF844 - Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1), at 153,222 to 154,661
GFF844
GFF845 - dTDP-glucose 4,6-dehydratase, at 154,752 to 155,495
GFF845
GFF846 - hypothetical protein, at 155,492 to 156,025
GFF846
GFF847 - Acetyltransferase, at 156,042 to 156,548
GFF847
GFF848 - no description, at 156,568 to 157,011
GFF848
Position (kb) 155
156
157 Strain fitness (log2 ratio) -2
-1
0
1
2 at 154.579 kb on + strand at 154.580 kb on - strand at 154.715 kb on - strand at 154.715 kb on - strand at 154.765 kb on + strand at 154.765 kb on + strand at 154.830 kb on + strand, within GFF845 at 155.130 kb on + strand, within GFF845 at 155.131 kb on - strand, within GFF845 at 155.131 kb on - strand, within GFF845 at 156.070 kb on + strand at 156.071 kb on - strand at 156.121 kb on + strand, within GFF847 at 156.121 kb on + strand, within GFF847 at 156.122 kb on - strand, within GFF847 at 156.122 kb on - strand, within GFF847 at 156.122 kb on - strand, within GFF847 at 156.181 kb on + strand, within GFF847 at 156.182 kb on - strand, within GFF847 at 156.184 kb on + strand, within GFF847 at 156.185 kb on - strand, within GFF847 at 156.615 kb on - strand, within GFF848 at 156.656 kb on + strand, within GFF848 at 156.656 kb on + strand, within GFF848 at 156.657 kb on - strand, within GFF848 at 156.657 kb on - strand, within GFF848 at 156.657 kb on - strand, within GFF848 at 156.657 kb on - strand, within GFF848 at 156.690 kb on + strand, within GFF848 at 156.691 kb on - strand, within GFF848 at 156.768 kb on - strand, within GFF848
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4 remove 154,579 + +0.5 154,580 - +2.2 154,715 - -1.7 154,715 - -0.4 154,765 + -2.0 154,765 + +0.2 154,830 + GFF845 0.10 -1.3 155,130 + GFF845 0.51 -2.7 155,131 - GFF845 0.51 +1.6 155,131 - GFF845 0.51 -1.8 156,070 + +0.5 156,071 - +1.7 156,121 + GFF847 0.16 -1.1 156,121 + GFF847 0.16 -0.7 156,122 - GFF847 0.16 +1.5 156,122 - GFF847 0.16 +0.1 156,122 - GFF847 0.16 +2.0 156,181 + GFF847 0.27 -0.6 156,182 - GFF847 0.28 -0.3 156,184 + GFF847 0.28 -2.2 156,185 - GFF847 0.28 +0.3 156,615 - GFF848 0.11 +1.2 156,656 + GFF848 0.20 -2.4 156,656 + GFF848 0.20 -1.4 156,657 - GFF848 0.20 +0.5 156,657 - GFF848 0.20 +0.7 156,657 - GFF848 0.20 -1.8 156,657 - GFF848 0.20 -2.2 156,690 + GFF848 0.27 +1.1 156,691 - GFF848 0.28 -0.8 156,768 - GFF848 0.45 -1.4
Or see this region's nucleotide sequence