Experiment: Community=Kojac gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF755 and GFF756 overlap by 4 nucleotides GFF756 and GFF757 overlap by 4 nucleotides GFF757 and GFF758 are separated by 9 nucleotides
GFF755 - Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB, at 18,670 to 20,568
GFF755
GFF756 - no description, at 20,565 to 20,711
GFF756
GFF757 - hypothetical protein, at 20,708 to 21,535
GFF757
GFF758 - 2-Keto-3-deoxy-D-manno-octulosonate-8-phosphate synthase (EC 2.5.1.55), at 21,545 to 22,390
GFF758
Position (kb) 20
21 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 19.573 kb on + strand, within GFF755 at 19.573 kb on + strand, within GFF755 at 19.835 kb on + strand, within GFF755 at 19.835 kb on + strand, within GFF755 at 19.835 kb on + strand, within GFF755 at 19.835 kb on + strand, within GFF755 at 19.836 kb on - strand, within GFF755 at 19.836 kb on - strand, within GFF755 at 19.836 kb on - strand, within GFF755 at 20.224 kb on + strand, within GFF755 at 20.224 kb on + strand, within GFF755 at 20.225 kb on - strand, within GFF755 at 20.225 kb on - strand, within GFF755 at 20.302 kb on + strand, within GFF755 at 20.329 kb on + strand, within GFF755 at 20.329 kb on + strand, within GFF755 at 20.329 kb on + strand, within GFF755 at 20.330 kb on - strand, within GFF755 at 20.330 kb on - strand, within GFF755 at 20.330 kb on - strand, within GFF755 at 20.656 kb on - strand, within GFF756 at 20.656 kb on - strand, within GFF756 at 20.677 kb on + strand, within GFF756 at 20.677 kb on + strand, within GFF756 at 20.677 kb on + strand, within GFF756 at 20.677 kb on + strand, within GFF756 at 20.677 kb on + strand, within GFF756 at 20.677 kb on + strand, within GFF756 at 20.677 kb on + strand, within GFF756 at 20.677 kb on + strand, within GFF756 at 20.677 kb on + strand, within GFF756 at 20.677 kb on + strand, within GFF756 at 20.677 kb on + strand, within GFF756 at 20.677 kb on + strand, within GFF756 at 20.677 kb on + strand, within GFF756 at 20.677 kb on + strand, within GFF756 at 20.677 kb on + strand, within GFF756 at 20.678 kb on - strand, within GFF756 at 20.678 kb on - strand, within GFF756 at 20.678 kb on - strand, within GFF756 at 20.678 kb on - strand, within GFF756 at 20.678 kb on - strand, within GFF756 at 20.678 kb on - strand, within GFF756 at 20.678 kb on - strand, within GFF756 at 20.678 kb on - strand, within GFF756 at 20.678 kb on - strand, within GFF756 at 20.678 kb on - strand, within GFF756 at 20.678 kb on - strand, within GFF756 at 20.681 kb on + strand, within GFF756 at 20.681 kb on + strand, within GFF756 at 20.681 kb on + strand, within GFF756 at 20.681 kb on + strand, within GFF756 at 20.681 kb on + strand, within GFF756 at 20.681 kb on + strand, within GFF756 at 20.681 kb on + strand, within GFF756 at 20.681 kb on + strand, within GFF756 at 20.681 kb on + strand, within GFF756 at 20.682 kb on - strand, within GFF756 at 20.682 kb on - strand, within GFF756 at 20.682 kb on - strand, within GFF756 at 20.682 kb on - strand, within GFF756 at 20.682 kb on - strand, within GFF756 at 20.682 kb on - strand, within GFF756 at 20.682 kb on - strand, within GFF756 at 20.682 kb on - strand, within GFF756 at 20.682 kb on - strand, within GFF756 at 20.682 kb on - strand, within GFF756 at 20.682 kb on - strand, within GFF756 at 20.682 kb on - strand, within GFF756 at 20.778 kb on + strand at 20.778 kb on + strand at 20.778 kb on + strand at 20.778 kb on + strand at 20.779 kb on - strand at 20.779 kb on - strand at 20.779 kb on - strand at 20.779 kb on - strand at 20.779 kb on - strand at 20.779 kb on - strand at 20.779 kb on - strand at 21.059 kb on + strand, within GFF757 at 21.059 kb on + strand, within GFF757 at 21.059 kb on + strand, within GFF757 at 21.059 kb on + strand, within GFF757 at 21.059 kb on + strand, within GFF757 at 21.060 kb on - strand, within GFF757 at 21.060 kb on - strand, within GFF757 at 21.236 kb on + strand, within GFF757 at 21.550 kb on + strand at 21.550 kb on + strand at 21.550 kb on + strand at 21.551 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4 remove 19,573 + GFF755 0.48 -2.6 19,573 + GFF755 0.48 -2.6 19,835 + GFF755 0.61 -2.0 19,835 + GFF755 0.61 -0.1 19,835 + GFF755 0.61 +1.3 19,835 + GFF755 0.61 +0.9 19,836 - GFF755 0.61 +0.3 19,836 - GFF755 0.61 -1.6 19,836 - GFF755 0.61 +0.1 20,224 + GFF755 0.82 +2.9 20,224 + GFF755 0.82 -0.6 20,225 - GFF755 0.82 -2.7 20,225 - GFF755 0.82 -0.3 20,302 + GFF755 0.86 -1.7 20,329 + GFF755 0.87 -2.2 20,329 + GFF755 0.87 -0.8 20,329 + GFF755 0.87 +0.4 20,330 - GFF755 0.87 +1.9 20,330 - GFF755 0.87 +0.1 20,330 - GFF755 0.87 -0.0 20,656 - GFF756 0.62 +0.9 20,656 - GFF756 0.62 -3.2 20,677 + GFF756 0.76 -2.4 20,677 + GFF756 0.76 -1.1 20,677 + GFF756 0.76 -0.5 20,677 + GFF756 0.76 -1.1 20,677 + GFF756 0.76 +1.1 20,677 + GFF756 0.76 +1.0 20,677 + GFF756 0.76 -2.2 20,677 + GFF756 0.76 -2.9 20,677 + GFF756 0.76 -2.1 20,677 + GFF756 0.76 -1.4 20,677 + GFF756 0.76 -1.6 20,677 + GFF756 0.76 -2.6 20,677 + GFF756 0.76 -1.2 20,677 + GFF756 0.76 +0.1 20,677 + GFF756 0.76 -2.2 20,678 - GFF756 0.77 -0.2 20,678 - GFF756 0.77 -2.0 20,678 - GFF756 0.77 -0.4 20,678 - GFF756 0.77 +0.6 20,678 - GFF756 0.77 +0.7 20,678 - GFF756 0.77 -2.4 20,678 - GFF756 0.77 -1.1 20,678 - GFF756 0.77 -0.7 20,678 - GFF756 0.77 +1.7 20,678 - GFF756 0.77 -0.6 20,678 - GFF756 0.77 +1.9 20,681 + GFF756 0.79 -0.6 20,681 + GFF756 0.79 -1.6 20,681 + GFF756 0.79 -1.9 20,681 + GFF756 0.79 -2.2 20,681 + GFF756 0.79 +0.4 20,681 + GFF756 0.79 +0.0 20,681 + GFF756 0.79 -0.6 20,681 + GFF756 0.79 -2.7 20,681 + GFF756 0.79 -0.4 20,682 - GFF756 0.80 +1.3 20,682 - GFF756 0.80 -1.1 20,682 - GFF756 0.80 -0.1 20,682 - GFF756 0.80 -0.6 20,682 - GFF756 0.80 -2.2 20,682 - GFF756 0.80 +0.3 20,682 - GFF756 0.80 +0.8 20,682 - GFF756 0.80 -0.3 20,682 - GFF756 0.80 -0.5 20,682 - GFF756 0.80 -0.2 20,682 - GFF756 0.80 -0.4 20,682 - GFF756 0.80 -1.8 20,778 + -2.0 20,778 + +0.9 20,778 + -2.8 20,778 + -1.9 20,779 - -1.3 20,779 - -0.4 20,779 - -1.5 20,779 - -3.5 20,779 - -1.6 20,779 - +0.3 20,779 - -3.2 21,059 + GFF757 0.42 +0.0 21,059 + GFF757 0.42 +0.2 21,059 + GFF757 0.42 -0.4 21,059 + GFF757 0.42 -1.8 21,059 + GFF757 0.42 -3.3 21,060 - GFF757 0.43 +1.5 21,060 - GFF757 0.43 -2.1 21,236 + GFF757 0.64 +0.2 21,550 + +0.2 21,550 + -0.3 21,550 + -0.4 21,551 - -2.5
Or see this region's nucleotide sequence