Strain Fitness in Variovorax sp. SCN45 around GFF7385

Experiment: Community=Kojac gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Kojac gum; Passage=4
2,175	+		GFF7384	0.24	+0.7
2,223	+		GFF7384	0.28	-2.6
2,223	+		GFF7384	0.28	+0.2
2,223	+		GFF7384	0.28	-0.6
2,937	+				-2.3
3,090	+				-1.2
3,091	-				-1.2
3,136	+				+2.1
3,136	+				+0.1
3,136	+				+2.8
3,180	+				-0.5
3,180	+				+0.0
3,181	-				-1.3
3,181	-				-1.2
3,181	-				-4.4
3,249	+		GFF7385	0.11	-0.5
3,250	-		GFF7385	0.11	-0.9
3,315	+		GFF7385	0.16	+0.4
3,316	-		GFF7385	0.16	+1.0
3,316	-		GFF7385	0.16	-0.1
3,437	-		GFF7385	0.25	-0.5
3,498	+		GFF7385	0.30	-0.6
3,498	+		GFF7385	0.30	-1.2
3,499	-		GFF7385	0.30	+0.2
3,538	-		GFF7385	0.33	-0.3
3,610	-		GFF7385	0.38	-2.7
3,879	-		GFF7385	0.57	+0.1
3,885	-		GFF7385	0.58	-1.1
3,891	+		GFF7385	0.58	-2.5
3,892	-		GFF7385	0.58	+0.0
4,667	+		GFF7386	0.24	-0.5
4,667	+		GFF7386	0.24	+0.9
4,667	+		GFF7386	0.24	-0.9
4,717	-		GFF7386	0.30	+2.5
4,889	+		GFF7386	0.49	-2.4
4,944	-		GFF7386	0.56	-0.3
4,944	-		GFF7386	0.56	+0.8
5,156	+		GFF7386	0.80	+0.9
5,156	+		GFF7386	0.80	-0.7
5,157	-		GFF7386	0.80	+0.2