Experiment: Community=Kojac gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF732 and GFF733 are separated by 332 nucleotides GFF733 and GFF734 are separated by 149 nucleotides GFF734 and GFF735 are separated by 520 nucleotides
GFF732 - Ligand-binding SRPBCC domain protein family, at 789,287 to 789,829
GFF732
GFF733 - no description, at 790,162 to 790,422
GFF733
GFF734 - no description, at 790,572 to 791,159
GFF734
GFF735 - no description, at 791,680 to 791,925
GFF735
Position (kb) 790
791
792 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 789.929 kb on + strand at 789.997 kb on + strand at 789.997 kb on + strand at 789.998 kb on - strand at 789.998 kb on - strand at 789.998 kb on - strand at 789.998 kb on - strand at 790.078 kb on - strand at 790.144 kb on + strand at 790.179 kb on - strand at 790.392 kb on + strand, within GFF733 at 790.393 kb on - strand, within GFF733 at 790.497 kb on + strand at 790.497 kb on + strand at 790.498 kb on - strand at 790.498 kb on - strand at 790.501 kb on + strand at 790.501 kb on + strand at 790.542 kb on - strand at 790.542 kb on - strand at 790.561 kb on - strand at 790.622 kb on - strand at 790.622 kb on - strand at 790.626 kb on - strand at 790.665 kb on + strand, within GFF734 at 790.701 kb on + strand, within GFF734 at 790.701 kb on + strand, within GFF734 at 790.701 kb on + strand, within GFF734 at 790.702 kb on - strand, within GFF734 at 790.702 kb on - strand, within GFF734 at 790.707 kb on + strand, within GFF734 at 790.707 kb on + strand, within GFF734 at 790.707 kb on + strand, within GFF734 at 790.707 kb on + strand, within GFF734 at 790.707 kb on + strand, within GFF734 at 790.708 kb on - strand, within GFF734 at 790.708 kb on - strand, within GFF734 at 790.708 kb on - strand, within GFF734 at 790.708 kb on - strand, within GFF734 at 790.708 kb on - strand, within GFF734 at 790.790 kb on - strand, within GFF734 at 790.790 kb on - strand, within GFF734 at 790.831 kb on - strand, within GFF734 at 790.923 kb on + strand, within GFF734 at 790.924 kb on - strand, within GFF734 at 790.924 kb on - strand, within GFF734 at 790.940 kb on + strand, within GFF734 at 790.940 kb on + strand, within GFF734 at 790.940 kb on + strand, within GFF734 at 790.941 kb on - strand, within GFF734 at 790.948 kb on - strand, within GFF734 at 790.948 kb on - strand, within GFF734 at 790.960 kb on - strand, within GFF734 at 790.960 kb on - strand, within GFF734 at 791.032 kb on + strand, within GFF734 at 791.032 kb on + strand, within GFF734 at 791.033 kb on - strand, within GFF734 at 791.033 kb on - strand, within GFF734 at 791.151 kb on + strand at 791.152 kb on - strand at 791.158 kb on - strand at 791.202 kb on - strand at 791.202 kb on - strand at 791.202 kb on - strand at 791.261 kb on + strand at 791.261 kb on + strand at 791.261 kb on + strand at 791.262 kb on - strand at 791.284 kb on + strand at 791.285 kb on - strand at 791.328 kb on - strand at 791.386 kb on + strand at 791.386 kb on + strand at 791.387 kb on - strand at 791.463 kb on - strand at 791.473 kb on + strand at 791.474 kb on - strand at 791.485 kb on + strand at 791.485 kb on + strand at 791.486 kb on - strand at 791.493 kb on + strand at 791.493 kb on + strand at 791.493 kb on + strand at 791.494 kb on - strand at 791.504 kb on + strand at 791.505 kb on - strand at 791.527 kb on - strand at 791.527 kb on - strand at 791.527 kb on - strand at 791.571 kb on + strand at 791.571 kb on + strand at 791.571 kb on + strand at 791.571 kb on + strand at 791.711 kb on + strand, within GFF735 at 791.797 kb on + strand, within GFF735 at 791.797 kb on + strand, within GFF735 at 791.797 kb on + strand, within GFF735 at 791.797 kb on + strand, within GFF735 at 791.797 kb on + strand, within GFF735 at 791.798 kb on - strand, within GFF735 at 791.798 kb on - strand, within GFF735 at 791.884 kb on + strand, within GFF735 at 791.884 kb on + strand, within GFF735 at 791.884 kb on + strand, within GFF735 at 791.885 kb on - strand, within GFF735 at 791.885 kb on - strand, within GFF735 at 791.885 kb on - strand, within GFF735 at 791.885 kb on - strand, within GFF735 at 791.890 kb on + strand, within GFF735 at 791.890 kb on + strand, within GFF735 at 791.890 kb on + strand, within GFF735 at 791.892 kb on + strand, within GFF735 at 791.892 kb on + strand, within GFF735 at 791.893 kb on - strand, within GFF735 at 791.929 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4 remove 789,929 + +1.2 789,997 + -3.0 789,997 + -2.1 789,998 - -0.3 789,998 - -1.3 789,998 - -1.5 789,998 - -2.7 790,078 - +0.6 790,144 + -1.2 790,179 - +0.9 790,392 + GFF733 0.88 +1.0 790,393 - GFF733 0.89 +0.8 790,497 + -3.1 790,497 + -0.5 790,498 - -0.2 790,498 - +0.7 790,501 + -2.2 790,501 + -0.7 790,542 - -1.0 790,542 - -2.2 790,561 - +1.5 790,622 - -1.8 790,622 - -0.8 790,626 - -1.9 790,665 + GFF734 0.16 -1.5 790,701 + GFF734 0.22 -0.4 790,701 + GFF734 0.22 -2.0 790,701 + GFF734 0.22 -3.5 790,702 - GFF734 0.22 -2.4 790,702 - GFF734 0.22 -1.5 790,707 + GFF734 0.23 -0.3 790,707 + GFF734 0.23 +0.6 790,707 + GFF734 0.23 +0.1 790,707 + GFF734 0.23 -0.3 790,707 + GFF734 0.23 -0.6 790,708 - GFF734 0.23 +1.8 790,708 - GFF734 0.23 -0.3 790,708 - GFF734 0.23 +1.0 790,708 - GFF734 0.23 -2.7 790,708 - GFF734 0.23 -0.9 790,790 - GFF734 0.37 -2.4 790,790 - GFF734 0.37 -0.2 790,831 - GFF734 0.44 -1.8 790,923 + GFF734 0.60 -3.4 790,924 - GFF734 0.60 -3.4 790,924 - GFF734 0.60 -0.4 790,940 + GFF734 0.63 -0.3 790,940 + GFF734 0.63 -2.1 790,940 + GFF734 0.63 -0.2 790,941 - GFF734 0.63 -0.3 790,948 - GFF734 0.64 -2.7 790,948 - GFF734 0.64 +0.3 790,960 - GFF734 0.66 -1.5 790,960 - GFF734 0.66 +2.1 791,032 + GFF734 0.78 -0.5 791,032 + GFF734 0.78 +1.3 791,033 - GFF734 0.78 -1.3 791,033 - GFF734 0.78 -1.7 791,151 + -0.3 791,152 - -1.9 791,158 - +0.6 791,202 - -1.6 791,202 - -0.3 791,202 - -1.1 791,261 + -3.0 791,261 + -0.3 791,261 + -1.3 791,262 - +1.2 791,284 + +3.2 791,285 - -1.1 791,328 - -0.9 791,386 + +2.0 791,386 + +3.3 791,387 - -1.3 791,463 - -0.3 791,473 + +1.8 791,474 - +0.5 791,485 + -1.6 791,485 + -0.0 791,486 - +0.1 791,493 + -0.5 791,493 + -0.2 791,493 + +0.2 791,494 - +0.1 791,504 + +1.7 791,505 - +0.1 791,527 - +2.1 791,527 - +2.1 791,527 - -1.3 791,571 + +1.9 791,571 + +1.4 791,571 + -0.6 791,571 + +0.4 791,711 + GFF735 0.13 +0.5 791,797 + GFF735 0.48 -0.5 791,797 + GFF735 0.48 -0.9 791,797 + GFF735 0.48 -0.9 791,797 + GFF735 0.48 -2.3 791,797 + GFF735 0.48 -0.8 791,798 - GFF735 0.48 -0.1 791,798 - GFF735 0.48 +0.9 791,884 + GFF735 0.83 +0.8 791,884 + GFF735 0.83 -1.0 791,884 + GFF735 0.83 -0.3 791,885 - GFF735 0.83 +0.7 791,885 - GFF735 0.83 -1.4 791,885 - GFF735 0.83 -1.8 791,885 - GFF735 0.83 +0.1 791,890 + GFF735 0.85 -0.3 791,890 + GFF735 0.85 +1.7 791,890 + GFF735 0.85 -3.4 791,892 + GFF735 0.86 -3.4 791,892 + GFF735 0.86 -0.2 791,893 - GFF735 0.87 +0.6 791,929 - -2.4
Or see this region's nucleotide sequence