Strain Fitness in Variovorax sp. SCN45 around GFF7291

Experiment: Community=Kojac gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Kojac gum; Passage=4
8,477	+		GFF7289	0.79	-2.7
8,477	+		GFF7289	0.79	+3.5
8,478	-		GFF7289	0.79	+0.2
8,577	-				+1.4
8,658	-				+0.4
8,731	+		GFF7290	0.14	-1.2
8,731	+		GFF7290	0.14	+1.3
8,731	+		GFF7290	0.14	+1.0
8,732	-		GFF7290	0.14	-0.3
8,858	-		GFF7290	0.31	+0.3
9,256	+		GFF7290	0.84	+1.2
9,256	+		GFF7290	0.84	-0.9
9,256	+		GFF7290	0.84	-3.3
9,256	+		GFF7290	0.84	-0.4
9,256	+		GFF7290	0.84	+0.3
9,256	+		GFF7290	0.84	-1.9
9,256	+		GFF7290	0.84	-0.1
9,256	+		GFF7290	0.84	-0.2
9,256	+		GFF7290	0.84	-0.4
9,256	+		GFF7290	0.84	-1.9
9,256	+		GFF7290	0.84	-1.6
9,256	+		GFF7290	0.84	-1.5
9,256	+		GFF7290	0.84	-1.3
9,256	+		GFF7290	0.84	-0.1
9,257	-		GFF7290	0.84	-1.5
9,257	-		GFF7290	0.84	+0.1
9,257	-		GFF7290	0.84	+0.4
9,257	-		GFF7290	0.84	+0.3
9,257	-		GFF7290	0.84	-0.1
9,257	-		GFF7290	0.84	+1.2
9,257	-		GFF7290	0.84	+0.0
9,257	-		GFF7290	0.84	-1.0
9,257	-		GFF7290	0.84	+2.4
9,257	-		GFF7290	0.84	+1.3
9,257	-		GFF7290	0.84	+1.0
9,257	-		GFF7290	0.84	+2.6
9,257	-		GFF7290	0.84	+0.1
9,257	-		GFF7290	0.84	-2.6
9,257	-		GFF7290	0.84	+2.3
9,257	-		GFF7290	0.84	-1.5
9,418	+				+1.9
9,418	+				+0.1
9,418	+				-0.2
9,418	+				+1.4
9,419	-				+1.7
9,474	+				+0.3
9,474	+				-1.3
9,474	+				-0.6
9,474	+				-0.7
9,474	+				-1.1
9,475	-				-1.3
9,475	-				-1.3
9,520	-				+0.9
9,525	+				-1.0
9,573	+		GFF7291	0.13	-1.4
9,573	+		GFF7291	0.13	-2.6
9,573	+		GFF7291	0.13	-2.0
9,573	+		GFF7291	0.13	-1.3
9,573	+		GFF7291	0.13	-1.2
9,573	+		GFF7291	0.13	-0.6
9,948	+		GFF7291	0.51	-0.4
9,948	+		GFF7291	0.51	-2.4
9,948	+		GFF7291	0.51	-0.7
9,948	+		GFF7291	0.51	-2.5
9,949	-		GFF7291	0.51	+6.2
10,290	+		GFF7291	0.86	+0.3
10,290	+		GFF7291	0.86	-1.0
10,291	-		GFF7291	0.86	+0.9
10,291	-		GFF7291	0.86	-1.0
10,291	-		GFF7291	0.86	+1.4
10,293	+		GFF7291	0.86	+3.4
10,293	+		GFF7291	0.86	-1.5
10,293	+		GFF7291	0.86	-0.1
10,293	+		GFF7291	0.86	+0.1
10,294	-		GFF7291	0.86	-2.0
10,294	-		GFF7291	0.86	-1.8
10,294	-		GFF7291	0.86	-2.8
10,417	+				+0.4
10,418	-				+2.4
10,418	-				+2.4
10,596	+				-0.5
10,596	+				+1.4
10,596	+				-0.5
10,596	+				-3.9
10,597	-				-0.4
10,597	-				+3.9
10,642	+				+0.1
10,642	+				+0.9
10,642	+				+1.1
10,642	+				-0.2
10,643	-				-0.4
10,647	+				-1.5
10,648	-				+0.2
11,068	+		GFF7292	0.19	+0.7
11,069	-		GFF7292	0.19	-0.1
11,318	-		GFF7292	0.31	-0.4
11,318	-		GFF7292	0.31	-1.0
11,371	+		GFF7292	0.33	-1.0
11,371	+		GFF7292	0.33	-1.3
11,372	-		GFF7292	0.33	+0.9