Strain Fitness in Variovorax sp. SCN45 around GFF7151

Experiment: Community=Kojac gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Kojac gum; Passage=4
15,903	+		GFF7150	0.18	+1.7
15,903	+		GFF7150	0.18	-1.5
15,903	+		GFF7150	0.18	+3.1
15,903	+		GFF7150	0.18	-0.3
15,903	+		GFF7150	0.18	+0.6
15,903	+		GFF7150	0.18	-2.6
15,903	+		GFF7150	0.18	-2.2
15,903	+		GFF7150	0.18	-0.1
15,903	+		GFF7150	0.18	+0.5
15,904	-		GFF7150	0.18	+2.4
15,904	-		GFF7150	0.18	+0.3
15,904	-		GFF7150	0.18	-0.5
15,904	-		GFF7150	0.18	-0.5
15,904	-		GFF7150	0.18	+0.0
15,904	-		GFF7150	0.18	-0.3
15,904	-		GFF7150	0.18	-0.6
15,904	-		GFF7150	0.18	+1.4
15,904	-		GFF7150	0.18	+0.1
15,906	+		GFF7150	0.18	-1.8
15,906	+		GFF7150	0.18	-2.4
15,906	+		GFF7150	0.18	+0.8
15,906	+		GFF7150	0.18	-2.7
15,907	-		GFF7150	0.18	-1.7
15,907	-		GFF7150	0.18	+0.6
15,907	-		GFF7150	0.18	+1.0
15,907	-		GFF7150	0.18	+2.3
15,907	-		GFF7150	0.18	+0.2
15,907	-		GFF7150	0.18	+0.6
15,907	-		GFF7150	0.18	-2.6
15,918	+		GFF7150	0.19	-3.6
15,918	+		GFF7150	0.19	-2.0
15,918	+		GFF7150	0.19	+0.7
15,919	-		GFF7150	0.19	-1.4
15,919	-		GFF7150	0.19	+0.5
15,919	-		GFF7150	0.19	-1.6
16,159	-		GFF7150	0.40	+1.2
16,359	+		GFF7150	0.58	-2.4
16,359	+		GFF7150	0.58	-0.3
16,359	+		GFF7150	0.58	+0.3
16,359	+		GFF7150	0.58	+1.2
16,359	+		GFF7150	0.58	+1.6
16,360	-		GFF7150	0.58	-1.7
16,360	-		GFF7150	0.58	-0.5
16,360	-		GFF7150	0.58	+0.8
16,407	+		GFF7150	0.62	-1.9
16,407	+		GFF7150	0.62	-0.1
16,419	+		GFF7150	0.63	+0.2
16,419	+		GFF7150	0.63	+1.1
16,419	+		GFF7150	0.63	-1.1
16,419	+		GFF7150	0.63	-0.2
16,419	+		GFF7150	0.63	-1.7
16,420	-		GFF7150	0.63	+0.7
16,482	+		GFF7150	0.68	-0.3
16,482	+		GFF7150	0.68	-0.9
16,482	+		GFF7150	0.68	-0.3
16,482	+		GFF7150	0.68	+0.2
16,482	+		GFF7150	0.68	+0.2
16,482	+		GFF7150	0.68	-0.1
16,482	+		GFF7150	0.68	-3.8
16,482	+		GFF7150	0.68	-1.6
16,483	-		GFF7150	0.68	-2.7
16,483	-		GFF7150	0.68	+0.8
16,483	-		GFF7150	0.68	-1.3
16,518	+		GFF7150	0.71	+2.1
16,519	-		GFF7150	0.72	+1.3
16,519	-		GFF7150	0.72	-1.1
16,853	+				+0.2
16,853	+				-1.9
16,853	+				+0.7
16,853	+				-2.0
16,853	+				-1.4
16,854	-				+1.8
16,854	-				+0.0
16,893	+				-1.0
16,894	-				+0.9
16,894	-				+0.5
16,896	+				-0.3
16,896	+				-2.3
16,896	+				+1.3
16,896	+				-0.5
16,896	+				-1.2
16,896	+				-2.3
16,896	+				-1.7
16,896	+				-0.3
16,896	+				+1.5
16,896	+				+0.1
16,896	+				-0.0
16,896	+				+0.6
16,896	+				-0.1
16,896	+				-0.2
16,896	+				-0.2
16,896	+				-0.1
16,896	+				-0.9
16,896	+				+2.5
16,896	+				-1.7
16,896	+				+0.4
16,896	+				+0.2
16,896	+				-2.8
16,896	+				-3.0
16,896	+				-0.6
16,897	-				+0.1
16,897	-				-3.1
16,897	-				-2.2
16,897	-				+1.4
16,897	-				-1.3
16,897	-				-1.5
16,897	-				-3.6
16,897	-				+1.3
16,897	-				-2.6
16,897	-				-1.4
16,897	-				-0.1
16,897	-				-0.8
16,897	-				-0.8
16,897	-				-1.2
16,897	-				-0.7
16,897	-				+0.2
16,897	-				-0.4
16,897	-				-2.1
16,897	-				+0.8
16,897	-				+0.4
16,897	-				+0.5
16,897	-				-1.9
16,911	+				+0.5
16,912	-				-0.3
17,100	+		GFF7151	0.22	-1.7
17,100	+		GFF7151	0.22	+0.6
17,100	+		GFF7151	0.22	-0.1
17,100	+		GFF7151	0.22	+1.2
17,100	+		GFF7151	0.22	-0.8
17,100	+		GFF7151	0.22	-0.7
17,100	+		GFF7151	0.22	-1.3
17,101	-		GFF7151	0.23	+1.3
17,101	-		GFF7151	0.23	-2.3
17,101	-		GFF7151	0.23	+0.4
17,101	-		GFF7151	0.23	-3.7
17,101	-		GFF7151	0.23	-2.2
17,101	-		GFF7151	0.23	-2.0
17,101	-		GFF7151	0.23	+0.1
17,145	+		GFF7151	0.27	+1.4
17,145	+		GFF7151	0.27	-0.1
17,145	+		GFF7151	0.27	-0.3
17,145	+		GFF7151	0.27	-3.0
17,145	+		GFF7151	0.27	+1.1
17,145	+		GFF7151	0.27	-1.5
17,145	+		GFF7151	0.27	-1.1
17,145	+		GFF7151	0.27	-3.0
17,145	+		GFF7151	0.27	-1.2
17,145	+		GFF7151	0.27	+0.5
17,145	+		GFF7151	0.27	+0.5
17,145	+		GFF7151	0.27	+0.4
17,146	-		GFF7151	0.27	+0.2
17,146	-		GFF7151	0.27	+0.9
17,146	-		GFF7151	0.27	+1.2
17,146	-		GFF7151	0.27	-0.3
17,146	-		GFF7151	0.27	+0.1
17,146	-		GFF7151	0.27	-0.1
17,146	-		GFF7151	0.27	+0.9
17,146	-		GFF7151	0.27	-2.7
17,146	-		GFF7151	0.27	+2.4
17,256	+		GFF7151	0.39	+1.4
17,256	+		GFF7151	0.39	+0.2
17,382	+		GFF7151	0.53	+1.2
17,382	+		GFF7151	0.53	-0.4
17,382	+		GFF7151	0.53	+0.1
17,383	-		GFF7151	0.53	+1.8
17,383	-		GFF7151	0.53	-1.7
17,400	+		GFF7151	0.55	-3.5
17,400	+		GFF7151	0.55	-0.1
17,400	+		GFF7151	0.55	-3.0
17,400	+		GFF7151	0.55	+0.3
17,400	+		GFF7151	0.55	-0.9
17,400	+		GFF7151	0.55	-1.9
17,400	+		GFF7151	0.55	+1.5
17,400	+		GFF7151	0.55	+0.9
17,400	+		GFF7151	0.55	+1.7
17,401	-		GFF7151	0.55	-1.6
17,401	-		GFF7151	0.55	+1.3
17,401	-		GFF7151	0.55	-0.8
17,401	-		GFF7151	0.55	-0.7
17,401	-		GFF7151	0.55	-2.4
17,401	-		GFF7151	0.55	-3.1
17,475	+		GFF7151	0.63	+1.9
17,475	+		GFF7151	0.63	-1.5
17,475	+		GFF7151	0.63	-1.7
17,475	+		GFF7151	0.63	+2.3
17,475	+		GFF7151	0.63	-2.6
17,475	+		GFF7151	0.63	-0.5
17,475	+		GFF7151	0.63	-3.3
17,475	+		GFF7151	0.63	+5.8
17,475	+		GFF7151	0.63	-0.1
17,475	+		GFF7151	0.63	-3.1
17,475	+		GFF7151	0.63	-0.8
17,475	+		GFF7151	0.63	+0.4
17,475	+		GFF7151	0.63	+1.5
17,475	+		GFF7151	0.63	-2.3
17,475	+		GFF7151	0.63	-0.3
17,476	-		GFF7151	0.63	-0.6
17,476	-		GFF7151	0.63	-0.5
17,476	-		GFF7151	0.63	-1.9
17,476	-		GFF7151	0.63	+1.2
17,476	-		GFF7151	0.63	+0.2
17,476	-		GFF7151	0.63	-0.1
17,476	-		GFF7151	0.63	-0.9
17,535	+		GFF7151	0.70	-0.7
17,535	+		GFF7151	0.70	-1.1
17,535	+		GFF7151	0.70	-0.7
17,535	+		GFF7151	0.70	-1.3
17,535	+		GFF7151	0.70	-0.9
17,535	+		GFF7151	0.70	-0.5
17,536	-		GFF7151	0.70	-0.8
17,536	-		GFF7151	0.70	-0.7
17,536	-		GFF7151	0.70	-1.0
17,536	-		GFF7151	0.70	+1.5
17,536	-		GFF7151	0.70	-1.3
17,853	+				-0.3
17,860	-				+2.0
17,869	-				-1.1
17,869	-				+1.7
17,870	+				-0.5
17,870	+				-0.8
17,881	+				-0.2
17,957	+				+1.0
17,957	+				-0.3
17,957	+				-0.1
17,957	+				-2.3
17,957	+				-2.8
17,957	+				+0.9
17,957	+				-0.5
17,957	+				-2.3
17,957	+				+0.0
17,958	-				-1.9
17,958	-				+1.7
17,958	-				-1.5
17,958	-				+2.2
17,958	-				-1.0
17,958	-				-1.1
17,958	-				-2.0
17,958	-				-0.4
17,958	-				-0.9
17,958	-				-0.3
18,057	+		GFF7152	0.15	-0.1
18,060	-		GFF7152	0.16	+1.7
18,080	+		GFF7152	0.19	-1.7
18,080	+		GFF7152	0.19	-0.5
18,080	+		GFF7152	0.19	-1.9
18,080	+		GFF7152	0.19	-1.2
18,080	+		GFF7152	0.19	-1.8
18,080	+		GFF7152	0.19	+1.4
18,080	+		GFF7152	0.19	-2.0
18,081	-		GFF7152	0.19	-1.0
18,081	-		GFF7152	0.19	-0.2
18,783	+				+0.4
18,783	+				-2.0
18,783	+				+0.7
18,784	-				-2.7
18,784	-				-0.2
18,784	-				-0.5