Experiment: Community=Kojac gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF710 and GFF711 overlap by 4 nucleotides GFF711 and GFF712 overlap by 4 nucleotides GFF712 and GFF713 are separated by 27 nucleotides
GFF710 - Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1), at 768,537 to 769,481
GFF710
GFF711 - KEGG: ribose transport system permease protein, at 769,478 to 770,443
GFF711
GFF712 - ABC transporter, ATP-binding protein (cluster 2, ribose/xylose/arabinose/galactose) / ABC transporter, ATP-binding protein (cluster 2, ribose/xylose/arabinose/galactose), at 770,440 to 771,990
GFF712
GFF713 - Succinate-semialdehyde dehydrogenase [NAD] (EC 1.2.1.24); Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.79), at 772,018 to 773,403
GFF713
Position (kb) 770
771
772 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 769.463 kb on + strand at 769.464 kb on - strand at 769.509 kb on + strand at 769.509 kb on + strand at 769.509 kb on + strand at 769.509 kb on + strand at 769.509 kb on + strand at 769.510 kb on - strand at 769.510 kb on - strand at 769.510 kb on - strand at 769.510 kb on - strand at 769.510 kb on - strand at 769.510 kb on - strand at 769.755 kb on + strand, within GFF711 at 769.755 kb on + strand, within GFF711 at 769.756 kb on - strand, within GFF711 at 769.756 kb on - strand, within GFF711 at 769.968 kb on + strand, within GFF711 at 769.983 kb on + strand, within GFF711 at 769.983 kb on + strand, within GFF711 at 769.983 kb on + strand, within GFF711 at 769.984 kb on - strand, within GFF711 at 770.187 kb on + strand, within GFF711 at 770.187 kb on + strand, within GFF711 at 770.188 kb on - strand, within GFF711 at 770.188 kb on - strand, within GFF711 at 770.188 kb on - strand, within GFF711 at 770.370 kb on + strand at 770.370 kb on + strand at 770.370 kb on + strand at 770.370 kb on + strand at 770.371 kb on - strand at 770.371 kb on - strand at 770.630 kb on + strand, within GFF712 at 770.649 kb on - strand, within GFF712 at 770.649 kb on - strand, within GFF712 at 770.649 kb on - strand, within GFF712 at 771.368 kb on + strand, within GFF712 at 771.368 kb on + strand, within GFF712 at 771.368 kb on + strand, within GFF712 at 771.368 kb on + strand, within GFF712 at 771.368 kb on + strand, within GFF712 at 771.368 kb on + strand, within GFF712 at 771.368 kb on + strand, within GFF712 at 771.368 kb on + strand, within GFF712 at 771.368 kb on + strand, within GFF712 at 771.368 kb on + strand, within GFF712 at 771.369 kb on - strand, within GFF712 at 771.369 kb on - strand, within GFF712 at 771.369 kb on - strand, within GFF712 at 771.369 kb on - strand, within GFF712 at 771.369 kb on - strand, within GFF712 at 771.369 kb on - strand, within GFF712 at 771.369 kb on - strand, within GFF712 at 772.019 kb on + strand at 772.020 kb on - strand at 772.362 kb on - strand, within GFF713 at 772.844 kb on + strand, within GFF713 at 772.844 kb on + strand, within GFF713 at 772.845 kb on - strand, within GFF713 at 772.845 kb on - strand, within GFF713 at 772.845 kb on - strand, within GFF713 at 772.935 kb on + strand, within GFF713 at 772.935 kb on + strand, within GFF713
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4 remove 769,463 + -1.3 769,464 - +0.1 769,509 + +0.2 769,509 + +1.2 769,509 + -1.9 769,509 + -0.3 769,509 + -1.3 769,510 - -0.3 769,510 - +4.6 769,510 - +0.1 769,510 - -0.1 769,510 - +1.2 769,510 - -1.3 769,755 + GFF711 0.29 -1.0 769,755 + GFF711 0.29 -0.3 769,756 - GFF711 0.29 -3.0 769,756 - GFF711 0.29 -0.2 769,968 + GFF711 0.51 -1.3 769,983 + GFF711 0.52 +0.5 769,983 + GFF711 0.52 +0.8 769,983 + GFF711 0.52 +1.8 769,984 - GFF711 0.52 -0.8 770,187 + GFF711 0.73 +0.1 770,187 + GFF711 0.73 -1.8 770,188 - GFF711 0.73 -1.6 770,188 - GFF711 0.73 +3.2 770,188 - GFF711 0.73 -0.6 770,370 + +0.6 770,370 + -1.6 770,370 + +1.4 770,370 + -0.2 770,371 - -0.1 770,371 - -0.5 770,630 + GFF712 0.12 -2.2 770,649 - GFF712 0.13 -0.3 770,649 - GFF712 0.13 -0.6 770,649 - GFF712 0.13 -2.2 771,368 + GFF712 0.60 +0.6 771,368 + GFF712 0.60 +1.0 771,368 + GFF712 0.60 -1.1 771,368 + GFF712 0.60 -1.5 771,368 + GFF712 0.60 +0.6 771,368 + GFF712 0.60 -1.4 771,368 + GFF712 0.60 -0.4 771,368 + GFF712 0.60 -0.6 771,368 + GFF712 0.60 -2.5 771,368 + GFF712 0.60 -1.0 771,369 - GFF712 0.60 +0.9 771,369 - GFF712 0.60 -0.3 771,369 - GFF712 0.60 -2.8 771,369 - GFF712 0.60 -0.6 771,369 - GFF712 0.60 +1.7 771,369 - GFF712 0.60 -2.6 771,369 - GFF712 0.60 +0.4 772,019 + -0.6 772,020 - -1.8 772,362 - GFF713 0.25 -1.0 772,844 + GFF713 0.60 -0.7 772,844 + GFF713 0.60 +0.1 772,845 - GFF713 0.60 -0.9 772,845 - GFF713 0.60 +0.1 772,845 - GFF713 0.60 +0.8 772,935 + GFF713 0.66 -0.3 772,935 + GFF713 0.66 -0.9
Or see this region's nucleotide sequence