Strain Fitness in Variovorax sp. SCN45 around GFF7116

Experiment: Community=Kojac gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Kojac gum; Passage=4
33,565	+				-1.9
33,565	+				-0.4
33,565	+				-2.1
33,565	+				+0.4
33,565	+				-0.0
33,565	+				-1.0
33,565	+				-2.5
33,565	+				+0.4
33,565	+				-1.1
33,565	+				-1.2
33,566	-				-0.3
33,566	-				+1.5
33,566	-				+1.1
33,566	-				-0.5
33,566	-				-0.6
33,567	+				-1.5
33,567	+				+0.3
33,568	-				+2.5
33,591	+				+1.6
33,591	+				-3.8
33,591	+				+0.3
33,591	+				+4.2
33,591	+				+0.2
33,591	+				-3.2
33,591	+				-0.4
33,591	+				-1.7
33,591	+				-1.4
33,591	+				-1.4
33,591	+				-0.8
33,592	-				-0.5
33,592	-				-1.9
33,592	-				+3.2
33,592	-				-1.0
33,592	-				+1.7
33,612	+				-1.8
33,657	+				-0.3
33,657	+				-0.9
33,657	+				+0.1
33,657	+				+0.3
33,657	+				-1.6
33,657	+				-1.5
33,657	+				+1.2
33,658	-				-1.3
33,658	-				-0.6
33,658	-				-2.6
33,658	-				-1.9
33,658	-				-1.2
33,686	+				-1.5
33,687	-				+2.9
33,687	-				+0.5
33,841	-		GFF7115	0.22	+0.9
33,897	+		GFF7115	0.29	-3.8
33,897	+		GFF7115	0.29	-1.1
33,897	+		GFF7115	0.29	-0.4
33,898	-		GFF7115	0.29	-0.3
33,898	-		GFF7115	0.29	-1.1
33,898	-		GFF7115	0.29	-1.8
33,918	+		GFF7115	0.31	-3.7
33,918	+		GFF7115	0.31	-1.4
33,919	-		GFF7115	0.31	-1.0
33,919	-		GFF7115	0.31	-1.3
34,101	-		GFF7115	0.53	-1.8
34,236	+		GFF7115	0.70	-0.7
34,236	+		GFF7115	0.70	-2.1
34,236	+		GFF7115	0.70	-0.5
34,236	+		GFF7115	0.70	-0.7
34,237	-		GFF7115	0.70	-3.0
34,237	-		GFF7115	0.70	-2.1
34,237	-		GFF7115	0.70	-2.0
34,237	-		GFF7115	0.70	-0.9
34,237	-		GFF7115	0.70	-2.2
34,237	-		GFF7115	0.70	-0.3
34,237	-		GFF7115	0.70	-1.2
34,237	-		GFF7115	0.70	-1.0
34,237	-		GFF7115	0.70	+0.1
34,237	-		GFF7115	0.70	-0.5
34,237	-		GFF7115	0.70	-1.9
34,245	+		GFF7115	0.71	+0.7
34,245	+		GFF7115	0.71	-2.7
34,246	-		GFF7115	0.71	-1.8
34,246	-		GFF7115	0.71	+0.6
34,246	-		GFF7115	0.71	-1.0
34,255	+		GFF7115	0.72	-0.9
34,255	+		GFF7115	0.72	-0.9
34,255	+		GFF7115	0.72	-2.1
34,256	-		GFF7115	0.72	+0.9
34,256	-		GFF7115	0.72	-2.4
34,256	-		GFF7115	0.72	-0.3
34,256	-		GFF7115	0.72	-0.3
34,256	-		GFF7115	0.72	+0.9
34,256	-		GFF7115	0.72	-2.0
34,256	-		GFF7115	0.72	+0.5
34,256	-		GFF7115	0.72	+0.5
34,256	-		GFF7115	0.72	-0.1
34,256	-		GFF7115	0.72	-1.2
34,256	-		GFF7115	0.72	-3.3
34,366	+		GFF7115	0.86	+0.2
34,366	+		GFF7115	0.86	+0.1
34,535	+				-0.7
34,535	+				-0.5
34,535	+				-0.0
34,535	+				-0.7
34,535	+				-0.5
34,535	+				+2.5
34,536	-				-2.1
34,536	-				-1.3
34,536	-				-0.3
34,536	-				-1.4
34,538	+				-1.3
34,538	+				+1.7
34,538	+				-0.3
34,538	+				-1.8
34,539	-				-3.3
34,550	+				+0.6
34,551	-				+1.1
34,551	-				+0.4
34,553	+				-0.5
34,553	+				-1.0
34,554	-				-1.9
34,554	-				-0.5
34,554	-				-0.5
34,554	-				-0.4
34,625	+		GFF7116	0.14	+1.0
34,625	+		GFF7116	0.14	-0.3
34,625	+		GFF7116	0.14	-1.0
34,626	-		GFF7116	0.14	+0.4
34,626	-		GFF7116	0.14	+0.4
34,626	-		GFF7116	0.14	+3.5
34,678	+		GFF7116	0.20	-0.9
34,678	+		GFF7116	0.20	+0.1
34,678	+		GFF7116	0.20	+0.9
34,679	-		GFF7116	0.20	+2.7
34,679	-		GFF7116	0.20	+0.8
34,679	-		GFF7116	0.20	+0.5
34,679	-		GFF7116	0.20	+2.0
34,679	-		GFF7116	0.20	-1.7
34,679	-		GFF7116	0.20	-0.3
34,733	+		GFF7116	0.26	-2.7
34,733	+		GFF7116	0.26	+1.6
34,733	+		GFF7116	0.26	-0.7
34,734	-		GFF7116	0.26	+2.5
34,734	-		GFF7116	0.26	+1.7
34,734	-		GFF7116	0.26	+0.0
34,734	-		GFF7116	0.26	-0.7
34,789	+		GFF7116	0.32	+2.1
34,789	+		GFF7116	0.32	-0.3
34,789	+		GFF7116	0.32	-1.5
34,790	-		GFF7116	0.32	-1.9
34,790	-		GFF7116	0.32	-1.7
34,863	-		GFF7116	0.40	+0.5
34,895	+		GFF7116	0.43	-1.5
34,895	+		GFF7116	0.43	-1.9
34,895	+		GFF7116	0.43	-0.6
34,895	+		GFF7116	0.43	-3.3
34,896	-		GFF7116	0.43	+0.6
34,896	-		GFF7116	0.43	+0.9
34,896	-		GFF7116	0.43	+1.7
35,014	+		GFF7116	0.56	-1.4
35,015	-		GFF7116	0.57	-3.3
35,015	-		GFF7116	0.57	+0.7
35,015	-		GFF7116	0.57	+0.1
35,028	-		GFF7116	0.58	+1.2
35,028	-		GFF7116	0.58	+1.7
35,028	-		GFF7116	0.58	-2.7
35,028	-		GFF7116	0.58	+0.1
35,028	-		GFF7116	0.58	+2.5
35,028	-		GFF7116	0.58	-0.0
35,046	+		GFF7116	0.60	-2.1
35,047	-		GFF7116	0.60	-1.7
35,154	+		GFF7116	0.72	-1.3
35,154	+		GFF7116	0.72	-0.4
35,154	+		GFF7116	0.72	-1.6
35,154	+		GFF7116	0.72	+0.3
35,155	-		GFF7116	0.72	-0.1
35,155	-		GFF7116	0.72	-1.2
35,155	-		GFF7116	0.72	+0.2
35,155	-		GFF7116	0.72	-0.7
35,155	-		GFF7116	0.72	+0.4
35,155	-		GFF7116	0.72	-2.8
35,195	+		GFF7116	0.76	+0.8
35,195	+		GFF7116	0.76	+0.9
35,196	-		GFF7116	0.76	+0.2
35,200	+		GFF7116	0.77	+0.3
35,200	+		GFF7116	0.77	+1.2
35,200	+		GFF7116	0.77	-0.1
35,200	+		GFF7116	0.77	+0.1
35,200	+		GFF7116	0.77	+2.2
35,200	+		GFF7116	0.77	+0.8
35,200	+		GFF7116	0.77	-3.6
35,200	+		GFF7116	0.77	-0.2
35,200	+		GFF7116	0.77	+1.0
35,200	+		GFF7116	0.77	-1.4
35,200	+		GFF7116	0.77	+0.5
35,200	+		GFF7116	0.77	-2.1
35,200	+		GFF7116	0.77	+0.7
35,200	+		GFF7116	0.77	+0.2
35,201	-		GFF7116	0.77	+1.3
35,201	-		GFF7116	0.77	+0.9
35,201	-		GFF7116	0.77	+2.2
35,201	-		GFF7116	0.77	-0.1
35,201	-		GFF7116	0.77	-2.7
35,201	-		GFF7116	0.77	+0.6
35,201	-		GFF7116	0.77	-1.4
35,201	-		GFF7116	0.77	+0.1
35,201	-		GFF7116	0.77	+0.3
35,201	-		GFF7116	0.77	+1.1
35,201	-		GFF7116	0.77	+0.8
35,201	-		GFF7116	0.77	+0.5
35,201	-		GFF7116	0.77	-0.9
35,201	-		GFF7116	0.77	-1.7
35,201	-		GFF7116	0.77	+0.1
35,201	-		GFF7116	0.77	-0.3
35,201	-		GFF7116	0.77	+0.0
35,201	-		GFF7116	0.77	-0.9
35,201	-		GFF7116	0.77	-0.7
35,201	-		GFF7116	0.77	+0.1
35,315	+		GFF7116	0.89	+0.1
35,315	+		GFF7116	0.89	+1.6
35,316	-		GFF7116	0.89	-0.4
35,316	-		GFF7116	0.89	+0.3
35,316	-		GFF7116	0.89	-0.1
35,316	-		GFF7116	0.89	+0.4
35,357	+				-3.4
35,357	+				-2.3
35,358	-				-0.3
35,582	+		GFF7117	0.21	+0.2
35,583	+		GFF7117	0.21	+0.1
35,583	+		GFF7117	0.21	-1.3
35,583	+		GFF7117	0.21	-0.3
35,583	+		GFF7117	0.21	-0.7
35,583	+		GFF7117	0.21	-3.9
35,583	+		GFF7117	0.21	+0.4
35,584	-		GFF7117	0.21	-1.9
35,584	-		GFF7117	0.21	+0.1
35,584	-		GFF7117	0.21	+1.3
35,584	-		GFF7117	0.21	+0.7
35,584	-		GFF7117	0.21	+0.5
35,584	-		GFF7117	0.21	+1.9
35,584	-		GFF7117	0.21	+0.5
35,584	-		GFF7117	0.21	-0.0
35,584	-		GFF7117	0.21	-1.8
35,584	-		GFF7117	0.21	-2.1
35,584	-		GFF7117	0.21	+1.5
35,771	+		GFF7117	0.44	-0.1
35,771	+		GFF7117	0.44	-1.0
35,771	+		GFF7117	0.44	+1.5
35,771	+		GFF7117	0.44	-2.2
35,771	+		GFF7117	0.44	+0.1
35,771	+		GFF7117	0.44	+1.0
35,771	+		GFF7117	0.44	-1.4
35,772	-		GFF7117	0.44	+0.8
35,772	-		GFF7117	0.44	-1.8
35,772	-		GFF7117	0.44	-1.7
35,772	-		GFF7117	0.44	-0.7
35,797	+		GFF7117	0.47	-0.7
35,971	+		GFF7117	0.68	-0.7
35,992	+		GFF7117	0.70	-0.8
35,992	+		GFF7117	0.70	-0.9
35,992	+		GFF7117	0.70	-2.1
35,992	+		GFF7117	0.70	+2.1
35,993	-		GFF7117	0.70	-2.4
35,993	-		GFF7117	0.70	+0.7
36,004	+		GFF7117	0.72	-0.1
36,094	+		GFF7117	0.82	-0.7
36,094	+		GFF7117	0.82	+0.1
36,095	-		GFF7117	0.83	-1.4
36,095	-		GFF7117	0.83	-0.7
36,095	-		GFF7117	0.83	-2.8
36,095	-		GFF7117	0.83	+3.1
36,109	+		GFF7117	0.84	-0.3
36,175	+				+1.7
36,175	+				-1.4
36,175	+				-0.5
36,176	-				-1.1
36,176	-				+1.3
36,176	-				-1.5
36,176	-				+0.1
36,186	+				-0.3
36,186	+				+0.4
36,186	+				-2.9
36,186	+				-1.8
36,187	-				-2.4
36,230	+				+2.5
36,230	+				-1.2
36,230	+				+0.0
36,230	+				-1.3
36,230	+				+0.3
36,230	+				+1.7
36,231	-				-0.3
36,231	-				+0.7
36,231	-				-1.5