Experiment: Community=Kojac gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7104 and GFF7105 overlap by 4 nucleotides GFF7105 and GFF7106 are separated by 81 nucleotides GFF7106 and GFF7107 overlap by 4 nucleotides
GFF7104 - 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68), at 22,093 to 22,743
GFF7104
GFF7105 - Homoprotocatechuate degradative operon repressor, at 22,740 to 23,171
GFF7105
GFF7106 - BUG/TctC family periplasmic protein, at 23,253 to 24,233
GFF7106
GFF7107 - 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases, at 24,230 to 25,900
GFF7107
Position (kb) 23
24
25 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 22.334 kb on - strand, within GFF7104 at 22.439 kb on + strand, within GFF7104 at 22.440 kb on - strand, within GFF7104 at 22.481 kb on + strand, within GFF7104 at 22.481 kb on + strand, within GFF7104 at 22.481 kb on + strand, within GFF7104 at 22.481 kb on + strand, within GFF7104 at 22.481 kb on + strand, within GFF7104 at 22.481 kb on + strand, within GFF7104 at 22.482 kb on - strand, within GFF7104 at 22.482 kb on - strand, within GFF7104 at 22.482 kb on - strand, within GFF7104 at 22.482 kb on - strand, within GFF7104 at 22.482 kb on - strand, within GFF7104 at 22.482 kb on - strand, within GFF7104 at 22.482 kb on - strand, within GFF7104 at 22.607 kb on + strand, within GFF7104 at 22.607 kb on + strand, within GFF7104 at 22.607 kb on + strand, within GFF7104 at 22.607 kb on + strand, within GFF7104 at 22.607 kb on + strand, within GFF7104 at 22.607 kb on + strand, within GFF7104 at 22.608 kb on - strand, within GFF7104 at 22.608 kb on - strand, within GFF7104 at 22.608 kb on - strand, within GFF7104 at 22.608 kb on - strand, within GFF7104 at 22.637 kb on + strand, within GFF7104 at 22.637 kb on + strand, within GFF7104 at 22.637 kb on + strand, within GFF7104 at 22.637 kb on + strand, within GFF7104 at 22.638 kb on - strand, within GFF7104 at 22.638 kb on - strand, within GFF7104 at 22.703 kb on + strand at 22.703 kb on + strand at 22.703 kb on + strand at 22.703 kb on + strand at 22.703 kb on + strand at 22.704 kb on - strand at 22.704 kb on - strand at 22.704 kb on - strand at 22.704 kb on - strand at 22.704 kb on - strand at 22.704 kb on - strand at 22.705 kb on + strand at 22.705 kb on + strand at 22.705 kb on + strand at 22.705 kb on + strand at 22.705 kb on + strand at 22.705 kb on + strand at 22.705 kb on + strand at 22.705 kb on + strand at 22.705 kb on + strand at 22.705 kb on + strand at 22.705 kb on + strand at 22.705 kb on + strand at 22.705 kb on + strand at 22.705 kb on + strand at 22.705 kb on + strand at 22.705 kb on + strand at 22.705 kb on + strand at 22.705 kb on + strand at 22.705 kb on + strand at 22.705 kb on + strand at 22.705 kb on + strand at 22.705 kb on + strand at 22.705 kb on + strand at 22.705 kb on + strand at 22.705 kb on + strand at 22.705 kb on + strand at 22.705 kb on + strand at 22.706 kb on - strand at 22.706 kb on - strand at 22.706 kb on - strand at 22.706 kb on - strand at 22.706 kb on - strand at 22.706 kb on - strand at 22.706 kb on - strand at 22.706 kb on - strand at 22.706 kb on - strand at 22.706 kb on - strand at 22.706 kb on - strand at 22.706 kb on - strand at 22.706 kb on - strand at 22.706 kb on - strand at 22.706 kb on - strand at 22.706 kb on - strand at 22.706 kb on - strand at 22.706 kb on - strand at 22.706 kb on - strand at 22.706 kb on - strand at 22.707 kb on - strand at 22.766 kb on + strand at 22.780 kb on + strand at 22.780 kb on + strand at 22.780 kb on + strand at 22.780 kb on + strand at 22.780 kb on + strand at 22.780 kb on + strand at 22.780 kb on + strand at 22.780 kb on + strand at 22.780 kb on + strand at 22.780 kb on + strand at 22.780 kb on + strand at 22.780 kb on + strand at 22.781 kb on - strand at 22.781 kb on - strand at 22.781 kb on - strand at 22.781 kb on - strand at 22.781 kb on - strand at 22.781 kb on - strand at 22.781 kb on - strand at 22.781 kb on - strand at 22.781 kb on - strand at 22.781 kb on - strand at 22.781 kb on - strand at 22.781 kb on - strand at 22.828 kb on + strand, within GFF7105 at 22.828 kb on + strand, within GFF7105 at 23.171 kb on + strand at 23.171 kb on + strand at 23.174 kb on + strand at 23.228 kb on + strand at 23.229 kb on - strand at 23.283 kb on - strand at 23.283 kb on - strand at 23.283 kb on - strand at 23.317 kb on + strand at 23.317 kb on + strand at 23.317 kb on + strand at 23.317 kb on + strand at 23.317 kb on + strand at 23.317 kb on + strand at 23.318 kb on - strand at 23.318 kb on - strand at 23.318 kb on - strand at 23.318 kb on - strand at 23.318 kb on - strand at 23.318 kb on - strand at 23.318 kb on - strand at 23.318 kb on - strand at 23.400 kb on + strand, within GFF7106 at 23.400 kb on + strand, within GFF7106 at 23.400 kb on + strand, within GFF7106 at 23.400 kb on + strand, within GFF7106 at 23.400 kb on + strand, within GFF7106 at 23.401 kb on - strand, within GFF7106 at 23.401 kb on - strand, within GFF7106 at 23.401 kb on - strand, within GFF7106 at 23.422 kb on + strand, within GFF7106 at 23.423 kb on - strand, within GFF7106 at 23.770 kb on + strand, within GFF7106 at 23.770 kb on + strand, within GFF7106 at 23.770 kb on + strand, within GFF7106 at 23.770 kb on + strand, within GFF7106 at 23.771 kb on - strand, within GFF7106 at 23.771 kb on - strand, within GFF7106 at 23.771 kb on - strand, within GFF7106 at 23.771 kb on - strand, within GFF7106 at 23.771 kb on - strand, within GFF7106 at 23.909 kb on - strand, within GFF7106 at 23.923 kb on + strand, within GFF7106 at 24.209 kb on - strand at 24.260 kb on - strand at 24.347 kb on + strand at 24.347 kb on + strand at 24.347 kb on + strand at 24.348 kb on - strand at 24.348 kb on - strand at 24.348 kb on - strand at 24.366 kb on + strand at 24.366 kb on + strand at 24.483 kb on + strand, within GFF7107 at 24.483 kb on + strand, within GFF7107 at 24.483 kb on + strand, within GFF7107 at 24.483 kb on + strand, within GFF7107 at 24.483 kb on + strand, within GFF7107 at 24.484 kb on - strand, within GFF7107 at 24.484 kb on - strand, within GFF7107 at 24.585 kb on + strand, within GFF7107 at 24.586 kb on - strand, within GFF7107 at 24.586 kb on - strand, within GFF7107 at 24.586 kb on - strand, within GFF7107 at 24.586 kb on - strand, within GFF7107 at 24.586 kb on - strand, within GFF7107 at 24.586 kb on - strand, within GFF7107 at 24.609 kb on + strand, within GFF7107 at 24.610 kb on - strand, within GFF7107 at 24.633 kb on + strand, within GFF7107 at 24.633 kb on + strand, within GFF7107 at 24.633 kb on + strand, within GFF7107 at 24.634 kb on - strand, within GFF7107 at 24.634 kb on - strand, within GFF7107 at 24.634 kb on - strand, within GFF7107 at 24.634 kb on - strand, within GFF7107 at 24.634 kb on - strand, within GFF7107 at 24.636 kb on + strand, within GFF7107 at 24.636 kb on + strand, within GFF7107 at 24.636 kb on + strand, within GFF7107 at 24.636 kb on + strand, within GFF7107 at 24.636 kb on + strand, within GFF7107 at 24.636 kb on + strand, within GFF7107 at 24.636 kb on + strand, within GFF7107 at 24.636 kb on + strand, within GFF7107 at 24.636 kb on + strand, within GFF7107 at 24.636 kb on + strand, within GFF7107 at 24.637 kb on - strand, within GFF7107 at 24.637 kb on - strand, within GFF7107 at 24.637 kb on - strand, within GFF7107 at 24.637 kb on - strand, within GFF7107 at 24.637 kb on - strand, within GFF7107 at 24.640 kb on - strand, within GFF7107 at 24.666 kb on + strand, within GFF7107 at 24.666 kb on + strand, within GFF7107 at 24.666 kb on + strand, within GFF7107 at 24.667 kb on - strand, within GFF7107 at 24.687 kb on + strand, within GFF7107 at 24.687 kb on + strand, within GFF7107 at 24.687 kb on + strand, within GFF7107 at 24.688 kb on - strand, within GFF7107 at 24.688 kb on - strand, within GFF7107 at 24.688 kb on - strand, within GFF7107 at 24.821 kb on - strand, within GFF7107 at 24.823 kb on + strand, within GFF7107 at 24.823 kb on + strand, within GFF7107 at 24.823 kb on + strand, within GFF7107 at 24.823 kb on + strand, within GFF7107 at 24.824 kb on - strand, within GFF7107 at 24.824 kb on - strand, within GFF7107 at 24.824 kb on - strand, within GFF7107 at 24.843 kb on + strand, within GFF7107 at 24.843 kb on + strand, within GFF7107 at 24.843 kb on + strand, within GFF7107 at 24.843 kb on + strand, within GFF7107 at 24.844 kb on - strand, within GFF7107 at 24.902 kb on + strand, within GFF7107 at 24.902 kb on + strand, within GFF7107 at 24.902 kb on + strand, within GFF7107 at 24.903 kb on - strand, within GFF7107 at 24.940 kb on - strand, within GFF7107 at 24.940 kb on - strand, within GFF7107 at 25.143 kb on + strand, within GFF7107 at 25.143 kb on + strand, within GFF7107 at 25.143 kb on + strand, within GFF7107 at 25.143 kb on + strand, within GFF7107 at 25.143 kb on + strand, within GFF7107 at 25.143 kb on + strand, within GFF7107 at 25.144 kb on - strand, within GFF7107 at 25.144 kb on - strand, within GFF7107 at 25.144 kb on - strand, within GFF7107 at 25.144 kb on - strand, within GFF7107 at 25.144 kb on - strand, within GFF7107 at 25.182 kb on + strand, within GFF7107 at 25.182 kb on + strand, within GFF7107 at 25.182 kb on + strand, within GFF7107 at 25.182 kb on + strand, within GFF7107 at 25.182 kb on + strand, within GFF7107 at 25.183 kb on - strand, within GFF7107 at 25.183 kb on - strand, within GFF7107
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4 remove 22,334 - GFF7104 0.37 -1.3 22,439 + GFF7104 0.53 +2.2 22,440 - GFF7104 0.53 -2.8 22,481 + GFF7104 0.60 +0.8 22,481 + GFF7104 0.60 +0.4 22,481 + GFF7104 0.60 +2.3 22,481 + GFF7104 0.60 -0.9 22,481 + GFF7104 0.60 -0.2 22,481 + GFF7104 0.60 +0.7 22,482 - GFF7104 0.60 -0.1 22,482 - GFF7104 0.60 -1.4 22,482 - GFF7104 0.60 +1.5 22,482 - GFF7104 0.60 +1.6 22,482 - GFF7104 0.60 -1.2 22,482 - GFF7104 0.60 -0.2 22,482 - GFF7104 0.60 -0.1 22,607 + GFF7104 0.79 -0.5 22,607 + GFF7104 0.79 -0.6 22,607 + GFF7104 0.79 +2.8 22,607 + GFF7104 0.79 -2.5 22,607 + GFF7104 0.79 +0.2 22,607 + GFF7104 0.79 -0.8 22,608 - GFF7104 0.79 -0.1 22,608 - GFF7104 0.79 -0.4 22,608 - GFF7104 0.79 +2.5 22,608 - GFF7104 0.79 -1.7 22,637 + GFF7104 0.84 +1.8 22,637 + GFF7104 0.84 +1.2 22,637 + GFF7104 0.84 -0.5 22,637 + GFF7104 0.84 +1.3 22,638 - GFF7104 0.84 -2.8 22,638 - GFF7104 0.84 -0.7 22,703 + -2.5 22,703 + -1.5 22,703 + -1.6 22,703 + +0.4 22,703 + +1.5 22,704 - -0.1 22,704 - -0.9 22,704 - -2.7 22,704 - -0.9 22,704 - -2.1 22,704 - -1.5 22,705 + +0.7 22,705 + -1.7 22,705 + +0.6 22,705 + -0.7 22,705 + -0.2 22,705 + +1.2 22,705 + +1.4 22,705 + +0.3 22,705 + -0.7 22,705 + -0.7 22,705 + -1.4 22,705 + -1.9 22,705 + +0.1 22,705 + -1.3 22,705 + -2.0 22,705 + +0.4 22,705 + -1.9 22,705 + -3.1 22,705 + +1.0 22,705 + +0.9 22,705 + +0.3 22,705 + -3.2 22,705 + -2.2 22,705 + +0.5 22,705 + -0.4 22,705 + -1.7 22,705 + +0.3 22,706 - -0.4 22,706 - +1.8 22,706 - -2.2 22,706 - -2.2 22,706 - -2.2 22,706 - +0.2 22,706 - -0.1 22,706 - +0.8 22,706 - +1.5 22,706 - +0.3 22,706 - -1.1 22,706 - +0.5 22,706 - +0.6 22,706 - +0.5 22,706 - -2.5 22,706 - -1.3 22,706 - -0.8 22,706 - -0.6 22,706 - +1.2 22,706 - -1.2 22,707 - +2.9 22,766 + +1.5 22,780 + +1.0 22,780 + -0.4 22,780 + +2.9 22,780 + +0.2 22,780 + -0.2 22,780 + -0.2 22,780 + -1.7 22,780 + +0.0 22,780 + -0.7 22,780 + +0.8 22,780 + -1.1 22,780 + +1.1 22,781 - -0.7 22,781 - -1.2 22,781 - +0.1 22,781 - -1.9 22,781 - +0.8 22,781 - -0.1 22,781 - -1.0 22,781 - +1.2 22,781 - +0.7 22,781 - +0.1 22,781 - -4.5 22,781 - -2.0 22,828 + GFF7105 0.20 -2.0 22,828 + GFF7105 0.20 +1.3 23,171 + +1.2 23,171 + +1.6 23,174 + -0.3 23,228 + +0.9 23,229 - -0.9 23,283 - -0.2 23,283 - +0.9 23,283 - +1.1 23,317 + -2.5 23,317 + +0.1 23,317 + +1.8 23,317 + -0.3 23,317 + -1.5 23,317 + +0.0 23,318 - -2.1 23,318 - -0.1 23,318 - -0.5 23,318 - -0.5 23,318 - -2.3 23,318 - +0.8 23,318 - -0.3 23,318 - -1.4 23,400 + GFF7106 0.15 +0.4 23,400 + GFF7106 0.15 -0.6 23,400 + GFF7106 0.15 -0.1 23,400 + GFF7106 0.15 -1.4 23,400 + GFF7106 0.15 +0.5 23,401 - GFF7106 0.15 -0.7 23,401 - GFF7106 0.15 -2.0 23,401 - GFF7106 0.15 -0.9 23,422 + GFF7106 0.17 -0.3 23,423 - GFF7106 0.17 -1.7 23,770 + GFF7106 0.53 -1.1 23,770 + GFF7106 0.53 +0.5 23,770 + GFF7106 0.53 +0.0 23,770 + GFF7106 0.53 -1.5 23,771 - GFF7106 0.53 -0.1 23,771 - GFF7106 0.53 +2.0 23,771 - GFF7106 0.53 +1.4 23,771 - GFF7106 0.53 -2.2 23,771 - GFF7106 0.53 +0.3 23,909 - GFF7106 0.67 +0.0 23,923 + GFF7106 0.68 -0.9 24,209 - -3.0 24,260 - -1.3 24,347 + -1.1 24,347 + -1.9 24,347 + -1.3 24,348 - -2.2 24,348 - -0.6 24,348 - +2.8 24,366 + -3.0 24,366 + +2.0 24,483 + GFF7107 0.15 -2.3 24,483 + GFF7107 0.15 -2.3 24,483 + GFF7107 0.15 -0.9 24,483 + GFF7107 0.15 +0.3 24,483 + GFF7107 0.15 -0.5 24,484 - GFF7107 0.15 +1.1 24,484 - GFF7107 0.15 -0.2 24,585 + GFF7107 0.21 +0.0 24,586 - GFF7107 0.21 -2.7 24,586 - GFF7107 0.21 +0.7 24,586 - GFF7107 0.21 +0.4 24,586 - GFF7107 0.21 +3.6 24,586 - GFF7107 0.21 -1.5 24,586 - GFF7107 0.21 -2.1 24,609 + GFF7107 0.23 -0.8 24,610 - GFF7107 0.23 -0.5 24,633 + GFF7107 0.24 +1.0 24,633 + GFF7107 0.24 +1.5 24,633 + GFF7107 0.24 -0.2 24,634 - GFF7107 0.24 -1.3 24,634 - GFF7107 0.24 -0.6 24,634 - GFF7107 0.24 -0.7 24,634 - GFF7107 0.24 -1.7 24,634 - GFF7107 0.24 -2.4 24,636 + GFF7107 0.24 +0.8 24,636 + GFF7107 0.24 +1.1 24,636 + GFF7107 0.24 -1.8 24,636 + GFF7107 0.24 +0.3 24,636 + GFF7107 0.24 +0.0 24,636 + GFF7107 0.24 +0.1 24,636 + GFF7107 0.24 -0.1 24,636 + GFF7107 0.24 -0.2 24,636 + GFF7107 0.24 +0.9 24,636 + GFF7107 0.24 -3.2 24,637 - GFF7107 0.24 -1.8 24,637 - GFF7107 0.24 +2.5 24,637 - GFF7107 0.24 -0.5 24,637 - GFF7107 0.24 -0.3 24,637 - GFF7107 0.24 -2.7 24,640 - GFF7107 0.25 +0.3 24,666 + GFF7107 0.26 +2.0 24,666 + GFF7107 0.26 -0.7 24,666 + GFF7107 0.26 +2.2 24,667 - GFF7107 0.26 +1.0 24,687 + GFF7107 0.27 +0.9 24,687 + GFF7107 0.27 -2.3 24,687 + GFF7107 0.27 +1.8 24,688 - GFF7107 0.27 +1.3 24,688 - GFF7107 0.27 -2.4 24,688 - GFF7107 0.27 +1.7 24,821 - GFF7107 0.35 -1.1 24,823 + GFF7107 0.35 +0.9 24,823 + GFF7107 0.35 -0.5 24,823 + GFF7107 0.35 +0.6 24,823 + GFF7107 0.35 +0.5 24,824 - GFF7107 0.36 +0.0 24,824 - GFF7107 0.36 +0.1 24,824 - GFF7107 0.36 +2.0 24,843 + GFF7107 0.37 +0.1 24,843 + GFF7107 0.37 -0.8 24,843 + GFF7107 0.37 -3.1 24,843 + GFF7107 0.37 -2.5 24,844 - GFF7107 0.37 -2.5 24,902 + GFF7107 0.40 -0.9 24,902 + GFF7107 0.40 -1.3 24,902 + GFF7107 0.40 -0.1 24,903 - GFF7107 0.40 +0.1 24,940 - GFF7107 0.42 -2.4 24,940 - GFF7107 0.42 -0.6 25,143 + GFF7107 0.55 -2.9 25,143 + GFF7107 0.55 -1.6 25,143 + GFF7107 0.55 +0.5 25,143 + GFF7107 0.55 +0.5 25,143 + GFF7107 0.55 +0.6 25,143 + GFF7107 0.55 -0.9 25,144 - GFF7107 0.55 +0.8 25,144 - GFF7107 0.55 -2.4 25,144 - GFF7107 0.55 -1.6 25,144 - GFF7107 0.55 -1.8 25,144 - GFF7107 0.55 +0.7 25,182 + GFF7107 0.57 -1.2 25,182 + GFF7107 0.57 -2.8 25,182 + GFF7107 0.57 -1.6 25,182 + GFF7107 0.57 -1.0 25,182 + GFF7107 0.57 -0.9 25,183 - GFF7107 0.57 -0.3 25,183 - GFF7107 0.57 +1.3
Or see this region's nucleotide sequence