Strain Fitness in Variovorax sp. SCN45 around GFF703

Experiment: Community=Kojac gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF702 and GFF703 are separated by 219 nucleotidesGFF703 and GFF704 are separated by 6 nucleotidesGFF704 and GFF705 are separated by 83 nucleotides GFF702 - ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate), at 757,951 to 759,180 GFF702 GFF703 - Efflux ABC transporter, permease/ATP-binding protein Atu2242, at 759,400 to 761,256 GFF703 GFF704 - Lactoylglutathione lyase and related lyases, at 761,263 to 761,694 GFF704 GFF705 - Transcriptional regulator, AcrR family, at 761,778 to 762,359 GFF705 Position (kb) 759 760 761 762Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 758.499 kb on - strand, within GFF702at 758.499 kb on - strand, within GFF702at 758.648 kb on + strand, within GFF702at 758.649 kb on - strand, within GFF702at 758.649 kb on - strand, within GFF702at 758.759 kb on + strand, within GFF702at 758.882 kb on + strand, within GFF702at 758.882 kb on + strand, within GFF702at 758.882 kb on + strand, within GFF702at 758.882 kb on + strand, within GFF702at 758.883 kb on - strand, within GFF702at 758.883 kb on - strand, within GFF702at 758.883 kb on - strand, within GFF702at 758.883 kb on - strand, within GFF702at 758.883 kb on - strand, within GFF702at 758.883 kb on - strand, within GFF702at 759.260 kb on + strandat 759.261 kb on - strandat 759.261 kb on - strandat 759.368 kb on - strandat 759.434 kb on - strandat 759.793 kb on + strand, within GFF703at 759.793 kb on + strand, within GFF703at 759.793 kb on + strand, within GFF703at 759.794 kb on - strand, within GFF703at 759.794 kb on - strand, within GFF703at 759.794 kb on - strand, within GFF703at 759.794 kb on - strand, within GFF703at 759.901 kb on + strand, within GFF703at 759.901 kb on + strand, within GFF703at 759.901 kb on + strand, within GFF703at 759.901 kb on + strand, within GFF703at 759.901 kb on + strand, within GFF703at 759.901 kb on + strand, within GFF703at 759.902 kb on - strand, within GFF703at 759.902 kb on - strand, within GFF703at 759.902 kb on - strand, within GFF703at 759.902 kb on - strand, within GFF703at 759.902 kb on - strand, within GFF703at 759.902 kb on - strand, within GFF703at 759.979 kb on + strand, within GFF703at 759.979 kb on + strand, within GFF703at 759.979 kb on + strand, within GFF703at 759.979 kb on + strand, within GFF703at 759.979 kb on + strand, within GFF703at 759.979 kb on + strand, within GFF703at 759.979 kb on + strand, within GFF703at 759.979 kb on + strand, within GFF703at 759.979 kb on + strand, within GFF703at 759.979 kb on + strand, within GFF703at 759.979 kb on + strand, within GFF703at 759.980 kb on - strand, within GFF703at 759.980 kb on - strand, within GFF703at 759.980 kb on - strand, within GFF703at 759.980 kb on - strand, within GFF703at 759.980 kb on - strand, within GFF703at 759.980 kb on - strand, within GFF703at 759.980 kb on - strand, within GFF703at 759.980 kb on - strand, within GFF703at 759.997 kb on + strand, within GFF703at 759.997 kb on + strand, within GFF703at 759.997 kb on + strand, within GFF703at 759.997 kb on + strand, within GFF703at 759.997 kb on + strand, within GFF703at 759.997 kb on + strand, within GFF703at 759.998 kb on - strand, within GFF703at 759.998 kb on - strand, within GFF703at 759.998 kb on - strand, within GFF703at 759.998 kb on - strand, within GFF703at 759.998 kb on - strand, within GFF703at 760.078 kb on + strand, within GFF703at 760.078 kb on + strand, within GFF703at 760.078 kb on + strand, within GFF703at 760.078 kb on + strand, within GFF703at 760.078 kb on + strand, within GFF703at 760.079 kb on - strand, within GFF703at 760.079 kb on - strand, within GFF703at 760.079 kb on - strand, within GFF703at 760.769 kb on - strand, within GFF703at 761.035 kb on + strand, within GFF703at 761.035 kb on + strand, within GFF703at 761.035 kb on + strand, within GFF703at 761.035 kb on + strand, within GFF703at 761.068 kb on - strand, within GFF703at 761.135 kb on + strandat 761.136 kb on - strandat 761.179 kb on + strandat 761.180 kb on - strandat 761.291 kb on + strandat 761.292 kb on - strandat 761.585 kb on + strand, within GFF704at 761.585 kb on + strand, within GFF704at 761.585 kb on + strand, within GFF704at 761.585 kb on + strand, within GFF704at 761.585 kb on + strand, within GFF704at 761.585 kb on + strand, within GFF704at 761.585 kb on + strand, within GFF704at 761.585 kb on + strand, within GFF704at 761.585 kb on + strand, within GFF704at 761.585 kb on + strand, within GFF704at 761.585 kb on + strand, within GFF704at 761.586 kb on - strand, within GFF704at 761.586 kb on - strand, within GFF704at 761.586 kb on - strand, within GFF704at 761.586 kb on - strand, within GFF704at 761.586 kb on - strand, within GFF704at 761.630 kb on + strand, within GFF704at 761.630 kb on + strand, within GFF704at 761.630 kb on + strand, within GFF704at 761.631 kb on - strand, within GFF704at 761.631 kb on - strand, within GFF704at 761.631 kb on - strand, within GFF704at 761.631 kb on - strand, within GFF704at 761.631 kb on - strand, within GFF704at 761.676 kb on - strandat 761.678 kb on + strandat 761.678 kb on + strandat 761.678 kb on + strandat 761.678 kb on + strandat 761.678 kb on + strandat 761.678 kb on + strandat 761.679 kb on - strandat 761.679 kb on - strandat 761.679 kb on - strandat 761.679 kb on - strandat 761.679 kb on - strandat 761.679 kb on - strandat 761.679 kb on - strandat 761.679 kb on - strandat 761.679 kb on - strandat 761.679 kb on - strandat 761.679 kb on - strandat 761.679 kb on - strandat 761.737 kb on - strandat 761.744 kb on - strandat 761.749 kb on - strandat 761.784 kb on - strandat 761.784 kb on - strandat 761.784 kb on - strandat 761.824 kb on + strandat 761.824 kb on + strandat 761.824 kb on + strandat 761.824 kb on + strandat 761.824 kb on + strandat 761.824 kb on + strandat 761.825 kb on - strandat 761.825 kb on - strandat 761.825 kb on - strandat 761.825 kb on - strandat 761.825 kb on - strandat 761.825 kb on - strandat 761.859 kb on + strand, within GFF705at 761.919 kb on + strand, within GFF705at 761.919 kb on + strand, within GFF705at 761.919 kb on + strand, within GFF705at 761.919 kb on + strand, within GFF705at 761.920 kb on - strand, within GFF705at 761.920 kb on - strand, within GFF705at 761.920 kb on - strand, within GFF705at 762.057 kb on + strand, within GFF705at 762.058 kb on - strand, within GFF705at 762.058 kb on - strand, within GFF705

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4
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758,499 - GFF702 0.45 -2.6
758,499 - GFF702 0.45 -2.5
758,648 + GFF702 0.57 -1.1
758,649 - GFF702 0.57 -0.0
758,649 - GFF702 0.57 -1.8
758,759 + GFF702 0.66 +0.7
758,882 + GFF702 0.76 +0.5
758,882 + GFF702 0.76 -1.1
758,882 + GFF702 0.76 -1.1
758,882 + GFF702 0.76 +0.7
758,883 - GFF702 0.76 -1.4
758,883 - GFF702 0.76 -0.4
758,883 - GFF702 0.76 -0.2
758,883 - GFF702 0.76 -2.7
758,883 - GFF702 0.76 -2.2
758,883 - GFF702 0.76 -1.6
759,260 + -3.3
759,261 - -1.6
759,261 - -3.0
759,368 - -1.2
759,434 - +1.5
759,793 + GFF703 0.21 -0.6
759,793 + GFF703 0.21 +0.4
759,793 + GFF703 0.21 +0.5
759,794 - GFF703 0.21 -1.6
759,794 - GFF703 0.21 -0.3
759,794 - GFF703 0.21 +1.4
759,794 - GFF703 0.21 -1.6
759,901 + GFF703 0.27 -0.4
759,901 + GFF703 0.27 -0.6
759,901 + GFF703 0.27 +1.0
759,901 + GFF703 0.27 -0.5
759,901 + GFF703 0.27 +3.5
759,901 + GFF703 0.27 +2.2
759,902 - GFF703 0.27 +1.2
759,902 - GFF703 0.27 -2.4
759,902 - GFF703 0.27 +1.1
759,902 - GFF703 0.27 -2.3
759,902 - GFF703 0.27 -2.2
759,902 - GFF703 0.27 +2.2
759,979 + GFF703 0.31 -1.0
759,979 + GFF703 0.31 +1.3
759,979 + GFF703 0.31 -1.1
759,979 + GFF703 0.31 -2.2
759,979 + GFF703 0.31 -0.9
759,979 + GFF703 0.31 -1.6
759,979 + GFF703 0.31 +0.7
759,979 + GFF703 0.31 -1.3
759,979 + GFF703 0.31 -1.6
759,979 + GFF703 0.31 -2.0
759,979 + GFF703 0.31 -0.5
759,980 - GFF703 0.31 -0.9
759,980 - GFF703 0.31 -1.3
759,980 - GFF703 0.31 -1.8
759,980 - GFF703 0.31 -3.0
759,980 - GFF703 0.31 -1.0
759,980 - GFF703 0.31 -2.6
759,980 - GFF703 0.31 -1.5
759,980 - GFF703 0.31 +3.9
759,997 + GFF703 0.32 -1.5
759,997 + GFF703 0.32 -0.9
759,997 + GFF703 0.32 -2.1
759,997 + GFF703 0.32 -2.4
759,997 + GFF703 0.32 -1.5
759,997 + GFF703 0.32 -0.3
759,998 - GFF703 0.32 -1.3
759,998 - GFF703 0.32 -3.2
759,998 - GFF703 0.32 -1.8
759,998 - GFF703 0.32 +1.0
759,998 - GFF703 0.32 -1.5
760,078 + GFF703 0.37 -2.2
760,078 + GFF703 0.37 -0.9
760,078 + GFF703 0.37 -2.6
760,078 + GFF703 0.37 -2.0
760,078 + GFF703 0.37 -0.4
760,079 - GFF703 0.37 +0.1
760,079 - GFF703 0.37 -1.2
760,079 - GFF703 0.37 +0.3
760,769 - GFF703 0.74 -1.8
761,035 + GFF703 0.88 +0.8
761,035 + GFF703 0.88 -1.0
761,035 + GFF703 0.88 +0.1
761,035 + GFF703 0.88 -2.2
761,068 - GFF703 0.90 +2.0
761,135 + +0.8
761,136 - -0.9
761,179 + -3.7
761,180 - -0.0
761,291 + +0.2
761,292 - +0.1
761,585 + GFF704 0.75 +1.0
761,585 + GFF704 0.75 -0.1
761,585 + GFF704 0.75 +0.6
761,585 + GFF704 0.75 +0.5
761,585 + GFF704 0.75 -0.3
761,585 + GFF704 0.75 -1.1
761,585 + GFF704 0.75 +1.0
761,585 + GFF704 0.75 +0.1
761,585 + GFF704 0.75 -0.3
761,585 + GFF704 0.75 -2.8
761,585 + GFF704 0.75 -3.3
761,586 - GFF704 0.75 -0.6
761,586 - GFF704 0.75 +0.1
761,586 - GFF704 0.75 -2.0
761,586 - GFF704 0.75 -1.1
761,586 - GFF704 0.75 -1.4
761,630 + GFF704 0.85 -0.3
761,630 + GFF704 0.85 +0.1
761,630 + GFF704 0.85 -1.3
761,631 - GFF704 0.85 -1.5
761,631 - GFF704 0.85 +0.4
761,631 - GFF704 0.85 -3.1
761,631 - GFF704 0.85 +1.7
761,631 - GFF704 0.85 +2.0
761,676 - +0.8
761,678 + +1.6
761,678 + +1.6
761,678 + -1.6
761,678 + +1.1
761,678 + -0.5
761,678 + -0.2
761,679 - -2.1
761,679 - -2.6
761,679 - -0.3
761,679 - -1.6
761,679 - +1.1
761,679 - +0.2
761,679 - +1.7
761,679 - -0.0
761,679 - -0.6
761,679 - -1.4
761,679 - -0.3
761,679 - +2.0
761,737 - -0.7
761,744 - +0.2
761,749 - -3.6
761,784 - -0.2
761,784 - +0.1
761,784 - +0.0
761,824 + -0.6
761,824 + -1.8
761,824 + -2.9
761,824 + +0.1
761,824 + +0.4
761,824 + -1.9
761,825 - -0.1
761,825 - -1.3
761,825 - -1.1
761,825 - -3.0
761,825 - -2.2
761,825 - -0.6
761,859 + GFF705 0.14 -2.1
761,919 + GFF705 0.24 -1.2
761,919 + GFF705 0.24 -0.3
761,919 + GFF705 0.24 +1.2
761,919 + GFF705 0.24 -1.1
761,920 - GFF705 0.24 +1.1
761,920 - GFF705 0.24 -0.6
761,920 - GFF705 0.24 +0.1
762,057 + GFF705 0.48 -1.4
762,058 - GFF705 0.48 -0.2
762,058 - GFF705 0.48 +0.0

Or see this region's nucleotide sequence