Strain Fitness in Variovorax sp. SCN45 around GFF702

Experiment: Community=Kojac gum; Passage=4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF700 and GFF701 are separated by 4 nucleotidesGFF701 and GFF702 are separated by 83 nucleotidesGFF702 and GFF703 are separated by 219 nucleotides GFF700 - ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate) / ABC transporter, ATP-binding protein 1 (cluster 4, leucine/isoleucine/valine/benzoate), at 755,041 to 756,987 GFF700 GFF701 - ABC transporter, permease protein 1 (cluster 4, leucine/isoleucine/valine/benzoate), at 756,992 to 757,867 GFF701 GFF702 - ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate), at 757,951 to 759,180 GFF702 GFF703 - Efflux ABC transporter, permease/ATP-binding protein Atu2242, at 759,400 to 761,256 GFF703 Position (kb) 757 758 759 760Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 757.084 kb on - strand, within GFF701at 757.098 kb on + strand, within GFF701at 757.098 kb on + strand, within GFF701at 757.099 kb on - strand, within GFF701at 757.378 kb on - strand, within GFF701at 757.378 kb on - strand, within GFF701at 757.689 kb on + strand, within GFF701at 757.689 kb on + strand, within GFF701at 757.690 kb on - strand, within GFF701at 757.690 kb on - strand, within GFF701at 757.794 kb on + strandat 757.794 kb on + strandat 757.815 kb on + strandat 757.816 kb on - strandat 757.816 kb on - strandat 757.816 kb on - strandat 757.952 kb on + strandat 757.952 kb on + strandat 757.952 kb on + strandat 757.952 kb on + strandat 757.953 kb on - strandat 757.953 kb on - strandat 757.953 kb on - strandat 757.953 kb on - strandat 758.120 kb on + strand, within GFF702at 758.120 kb on + strand, within GFF702at 758.120 kb on + strand, within GFF702at 758.121 kb on - strand, within GFF702at 758.121 kb on - strand, within GFF702at 758.121 kb on - strand, within GFF702at 758.121 kb on - strand, within GFF702at 758.121 kb on - strand, within GFF702at 758.121 kb on - strand, within GFF702at 758.225 kb on + strand, within GFF702at 758.225 kb on + strand, within GFF702at 758.225 kb on + strand, within GFF702at 758.225 kb on + strand, within GFF702at 758.225 kb on + strand, within GFF702at 758.226 kb on - strand, within GFF702at 758.226 kb on - strand, within GFF702at 758.226 kb on - strand, within GFF702at 758.237 kb on + strand, within GFF702at 758.238 kb on - strand, within GFF702at 758.238 kb on - strand, within GFF702at 758.238 kb on - strand, within GFF702at 758.238 kb on - strand, within GFF702at 758.499 kb on - strand, within GFF702at 758.499 kb on - strand, within GFF702at 758.648 kb on + strand, within GFF702at 758.649 kb on - strand, within GFF702at 758.649 kb on - strand, within GFF702at 758.759 kb on + strand, within GFF702at 758.882 kb on + strand, within GFF702at 758.882 kb on + strand, within GFF702at 758.882 kb on + strand, within GFF702at 758.882 kb on + strand, within GFF702at 758.883 kb on - strand, within GFF702at 758.883 kb on - strand, within GFF702at 758.883 kb on - strand, within GFF702at 758.883 kb on - strand, within GFF702at 758.883 kb on - strand, within GFF702at 758.883 kb on - strand, within GFF702at 759.260 kb on + strandat 759.261 kb on - strandat 759.261 kb on - strandat 759.368 kb on - strandat 759.434 kb on - strandat 759.793 kb on + strand, within GFF703at 759.793 kb on + strand, within GFF703at 759.793 kb on + strand, within GFF703at 759.794 kb on - strand, within GFF703at 759.794 kb on - strand, within GFF703at 759.794 kb on - strand, within GFF703at 759.794 kb on - strand, within GFF703at 759.901 kb on + strand, within GFF703at 759.901 kb on + strand, within GFF703at 759.901 kb on + strand, within GFF703at 759.901 kb on + strand, within GFF703at 759.901 kb on + strand, within GFF703at 759.901 kb on + strand, within GFF703at 759.902 kb on - strand, within GFF703at 759.902 kb on - strand, within GFF703at 759.902 kb on - strand, within GFF703at 759.902 kb on - strand, within GFF703at 759.902 kb on - strand, within GFF703at 759.902 kb on - strand, within GFF703at 759.979 kb on + strand, within GFF703at 759.979 kb on + strand, within GFF703at 759.979 kb on + strand, within GFF703at 759.979 kb on + strand, within GFF703at 759.979 kb on + strand, within GFF703at 759.979 kb on + strand, within GFF703at 759.979 kb on + strand, within GFF703at 759.979 kb on + strand, within GFF703at 759.979 kb on + strand, within GFF703at 759.979 kb on + strand, within GFF703at 759.979 kb on + strand, within GFF703at 759.980 kb on - strand, within GFF703at 759.980 kb on - strand, within GFF703at 759.980 kb on - strand, within GFF703at 759.980 kb on - strand, within GFF703at 759.980 kb on - strand, within GFF703at 759.980 kb on - strand, within GFF703at 759.980 kb on - strand, within GFF703at 759.980 kb on - strand, within GFF703at 759.997 kb on + strand, within GFF703at 759.997 kb on + strand, within GFF703at 759.997 kb on + strand, within GFF703at 759.997 kb on + strand, within GFF703at 759.997 kb on + strand, within GFF703at 759.997 kb on + strand, within GFF703at 759.998 kb on - strand, within GFF703at 759.998 kb on - strand, within GFF703at 759.998 kb on - strand, within GFF703at 759.998 kb on - strand, within GFF703at 759.998 kb on - strand, within GFF703at 760.078 kb on + strand, within GFF703at 760.078 kb on + strand, within GFF703at 760.078 kb on + strand, within GFF703at 760.078 kb on + strand, within GFF703at 760.078 kb on + strand, within GFF703at 760.079 kb on - strand, within GFF703at 760.079 kb on - strand, within GFF703at 760.079 kb on - strand, within GFF703

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4
remove
757,084 - GFF701 0.11 -4.2
757,098 + GFF701 0.12 -2.3
757,098 + GFF701 0.12 +0.1
757,099 - GFF701 0.12 -3.0
757,378 - GFF701 0.44 -1.4
757,378 - GFF701 0.44 -0.6
757,689 + GFF701 0.80 -1.8
757,689 + GFF701 0.80 +0.7
757,690 - GFF701 0.80 -2.2
757,690 - GFF701 0.80 -0.3
757,794 + -0.7
757,794 + -0.4
757,815 + -0.1
757,816 - -3.6
757,816 - -1.6
757,816 - -2.9
757,952 + -3.0
757,952 + -1.3
757,952 + -0.9
757,952 + -2.6
757,953 - -1.3
757,953 - +0.0
757,953 - -1.3
757,953 - -1.8
758,120 + GFF702 0.14 +1.4
758,120 + GFF702 0.14 +1.1
758,120 + GFF702 0.14 -3.0
758,121 - GFF702 0.14 -0.3
758,121 - GFF702 0.14 +1.0
758,121 - GFF702 0.14 -1.4
758,121 - GFF702 0.14 -0.4
758,121 - GFF702 0.14 -0.4
758,121 - GFF702 0.14 -1.5
758,225 + GFF702 0.22 +1.7
758,225 + GFF702 0.22 -0.9
758,225 + GFF702 0.22 +1.5
758,225 + GFF702 0.22 -0.3
758,225 + GFF702 0.22 +0.7
758,226 - GFF702 0.22 +0.6
758,226 - GFF702 0.22 +1.2
758,226 - GFF702 0.22 -0.8
758,237 + GFF702 0.23 -1.1
758,238 - GFF702 0.23 -1.0
758,238 - GFF702 0.23 -3.5
758,238 - GFF702 0.23 -0.4
758,238 - GFF702 0.23 -0.8
758,499 - GFF702 0.45 -2.6
758,499 - GFF702 0.45 -2.5
758,648 + GFF702 0.57 -1.1
758,649 - GFF702 0.57 -0.0
758,649 - GFF702 0.57 -1.8
758,759 + GFF702 0.66 +0.7
758,882 + GFF702 0.76 +0.5
758,882 + GFF702 0.76 -1.1
758,882 + GFF702 0.76 -1.1
758,882 + GFF702 0.76 +0.7
758,883 - GFF702 0.76 -1.4
758,883 - GFF702 0.76 -0.4
758,883 - GFF702 0.76 -0.2
758,883 - GFF702 0.76 -2.7
758,883 - GFF702 0.76 -2.2
758,883 - GFF702 0.76 -1.6
759,260 + -3.3
759,261 - -1.6
759,261 - -3.0
759,368 - -1.2
759,434 - +1.5
759,793 + GFF703 0.21 -0.6
759,793 + GFF703 0.21 +0.4
759,793 + GFF703 0.21 +0.5
759,794 - GFF703 0.21 -1.6
759,794 - GFF703 0.21 -0.3
759,794 - GFF703 0.21 +1.4
759,794 - GFF703 0.21 -1.6
759,901 + GFF703 0.27 -0.4
759,901 + GFF703 0.27 -0.6
759,901 + GFF703 0.27 +1.0
759,901 + GFF703 0.27 -0.5
759,901 + GFF703 0.27 +3.5
759,901 + GFF703 0.27 +2.2
759,902 - GFF703 0.27 +1.2
759,902 - GFF703 0.27 -2.4
759,902 - GFF703 0.27 +1.1
759,902 - GFF703 0.27 -2.3
759,902 - GFF703 0.27 -2.2
759,902 - GFF703 0.27 +2.2
759,979 + GFF703 0.31 -1.0
759,979 + GFF703 0.31 +1.3
759,979 + GFF703 0.31 -1.1
759,979 + GFF703 0.31 -2.2
759,979 + GFF703 0.31 -0.9
759,979 + GFF703 0.31 -1.6
759,979 + GFF703 0.31 +0.7
759,979 + GFF703 0.31 -1.3
759,979 + GFF703 0.31 -1.6
759,979 + GFF703 0.31 -2.0
759,979 + GFF703 0.31 -0.5
759,980 - GFF703 0.31 -0.9
759,980 - GFF703 0.31 -1.3
759,980 - GFF703 0.31 -1.8
759,980 - GFF703 0.31 -3.0
759,980 - GFF703 0.31 -1.0
759,980 - GFF703 0.31 -2.6
759,980 - GFF703 0.31 -1.5
759,980 - GFF703 0.31 +3.9
759,997 + GFF703 0.32 -1.5
759,997 + GFF703 0.32 -0.9
759,997 + GFF703 0.32 -2.1
759,997 + GFF703 0.32 -2.4
759,997 + GFF703 0.32 -1.5
759,997 + GFF703 0.32 -0.3
759,998 - GFF703 0.32 -1.3
759,998 - GFF703 0.32 -3.2
759,998 - GFF703 0.32 -1.8
759,998 - GFF703 0.32 +1.0
759,998 - GFF703 0.32 -1.5
760,078 + GFF703 0.37 -2.2
760,078 + GFF703 0.37 -0.9
760,078 + GFF703 0.37 -2.6
760,078 + GFF703 0.37 -2.0
760,078 + GFF703 0.37 -0.4
760,079 - GFF703 0.37 +0.1
760,079 - GFF703 0.37 -1.2
760,079 - GFF703 0.37 +0.3

Or see this region's nucleotide sequence