Strain Fitness in Variovorax sp. SCN45 around GFF6983

Experiment: Community=Kojac gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Kojac gum; Passage=4
621	+		GFF6981	0.42	+0.6
674	+		GFF6981	0.51	+1.9
781	-		GFF6981	0.69	-0.4
909	-				-1.1
930	+				-2.7
1,040	+		GFF6982	0.16	+2.7
1,040	+		GFF6982	0.16	+2.8
1,257	-		GFF6982	0.61	+0.3
1,257	-		GFF6982	0.61	+1.2
1,509	+				+0.4
1,510	-				+0.1
1,510	-				-0.4
1,724	-		GFF6983	0.20	+0.2
1,724	-		GFF6983	0.20	+0.2
1,724	-		GFF6983	0.20	+1.1
2,386	+		GFF6983	0.72	+1.4
2,386	+		GFF6983	0.72	-1.1
2,560	+		GFF6983	0.85	+1.6
2,560	+		GFF6983	0.85	-1.0
2,560	+		GFF6983	0.85	-0.0
2,561	-		GFF6983	0.85	+1.0
2,739	-				+0.5
2,762	+				-1.5
2,921	+		GFF6984	0.20	+0.0
2,922	-		GFF6984	0.20	+2.3
2,980	+		GFF6984	0.29	-1.8
3,022	+		GFF6984	0.35	-1.6
3,022	+		GFF6984	0.35	-1.1
3,023	-		GFF6984	0.35	-3.0
3,023	-		GFF6984	0.35	+1.8
3,131	+		GFF6984	0.51	-0.0
3,382	+		GFF6984	0.87	+0.8
3,410	+				-0.1
3,557	-				-1.6
3,557	-				-1.6
3,557	-				-0.4
3,634	-				+0.8