Strain Fitness in Variovorax sp. SCN45 around GFF6977

Experiment: Community=Kojac gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Kojac gum; Passage=4
48,767	+				+0.2
48,768	-				+2.6
49,080	+		GFF6976	0.22	+1.2
49,080	+		GFF6976	0.22	-0.4
49,080	+		GFF6976	0.22	-0.0
49,081	-		GFF6976	0.22	-2.5
49,081	-		GFF6976	0.22	-0.2
49,081	-		GFF6976	0.22	-2.0
49,288	+		GFF6976	0.51	-0.2
49,288	+		GFF6976	0.51	-1.5
49,289	-		GFF6976	0.52	-0.4
49,310	-		GFF6976	0.55	+0.3
49,700	+				-1.5
49,700	+				+0.0
49,746	-		GFF6977	0.18	-2.3
50,109	+		GFF6977	0.83	-0.4
50,109	+		GFF6977	0.83	-1.2
50,117	+		GFF6977	0.85	-2.8
50,118	-		GFF6977	0.85	+1.0
50,118	-		GFF6977	0.85	-1.0
50,428	+		GFF6978	0.30	+2.8
50,716	+		GFF6978	0.72	-1.0
50,717	-		GFF6978	0.72	-1.9
50,749	+		GFF6978	0.76	+0.8
50,752	+		GFF6978	0.77	-0.0
50,753	-		GFF6978	0.77	+0.6
50,833	+		GFF6978	0.88	-1.3
50,833	+		GFF6978	0.88	-0.2
50,833	+		GFF6978	0.88	-1.6
50,834	-		GFF6978	0.88	+2.5
50,834	-		GFF6978	0.88	+0.4
50,834	-		GFF6978	0.88	+1.0
50,834	-		GFF6978	0.88	+1.8
50,887	+				-0.1
50,887	+				-1.2
51,005	+				-0.3
51,005	+				-0.4
51,006	-				+1.3
51,006	-				-1.7