Strain Fitness in Variovorax sp. SCN45 around GFF696

Experiment: Community=Kojac gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF694 and GFF695 overlap by 4 nucleotidesGFF695 and GFF696 are separated by 164 nucleotidesGFF696 and GFF697 are separated by 3 nucleotidesGFF697 and GFF698 are separated by 121 nucleotides GFF694 - 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (EC 3.7.1.-), at 749,345 to 750,208 GFF694 GFF695 - Cytochrome B561, at 750,205 to 750,777 GFF695 GFF696 - Glycosyl transferase, group 2 family, at 750,942 to 752,372 GFF696 GFF697 - FIG074102: hypothetical protein, at 752,376 to 753,200 GFF697 GFF698 - Transcriptional regulator, LysR family, at 753,322 to 754,206 GFF698 Position (kb) 750 751 752 753Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 750.302 kb on + strand, within GFF695at 750.302 kb on + strand, within GFF695at 750.302 kb on + strand, within GFF695at 750.303 kb on - strand, within GFF695at 750.303 kb on - strand, within GFF695at 750.311 kb on + strand, within GFF695at 750.311 kb on + strand, within GFF695at 750.311 kb on + strand, within GFF695at 750.311 kb on + strand, within GFF695at 750.311 kb on + strand, within GFF695at 750.312 kb on - strand, within GFF695at 750.312 kb on - strand, within GFF695at 750.312 kb on - strand, within GFF695at 750.312 kb on - strand, within GFF695at 750.422 kb on + strand, within GFF695at 750.422 kb on + strand, within GFF695at 750.422 kb on + strand, within GFF695at 750.422 kb on + strand, within GFF695at 750.422 kb on + strand, within GFF695at 750.422 kb on + strand, within GFF695at 750.422 kb on + strand, within GFF695at 750.423 kb on - strand, within GFF695at 750.423 kb on - strand, within GFF695at 750.423 kb on - strand, within GFF695at 750.423 kb on - strand, within GFF695at 750.423 kb on - strand, within GFF695at 750.423 kb on - strand, within GFF695at 750.423 kb on - strand, within GFF695at 750.423 kb on - strand, within GFF695at 750.423 kb on - strand, within GFF695at 750.423 kb on - strand, within GFF695at 750.423 kb on - strand, within GFF695at 750.423 kb on - strand, within GFF695at 750.423 kb on - strand, within GFF695at 750.500 kb on + strand, within GFF695at 750.500 kb on + strand, within GFF695at 750.501 kb on - strand, within GFF695at 750.501 kb on - strand, within GFF695at 750.501 kb on - strand, within GFF695at 750.548 kb on + strand, within GFF695at 750.548 kb on + strand, within GFF695at 750.548 kb on + strand, within GFF695at 750.549 kb on - strand, within GFF695at 750.549 kb on - strand, within GFF695at 750.675 kb on - strand, within GFF695at 750.758 kb on + strandat 750.758 kb on + strandat 750.759 kb on - strandat 750.759 kb on - strandat 750.759 kb on - strandat 750.876 kb on + strandat 750.876 kb on + strandat 750.877 kb on - strandat 750.877 kb on - strandat 750.877 kb on - strandat 750.877 kb on - strandat 750.877 kb on - strandat 750.877 kb on - strandat 750.877 kb on - strandat 751.086 kb on + strand, within GFF696at 751.086 kb on + strand, within GFF696at 751.086 kb on + strand, within GFF696at 751.086 kb on + strand, within GFF696at 751.086 kb on + strand, within GFF696at 751.086 kb on + strand, within GFF696at 751.086 kb on + strand, within GFF696at 751.086 kb on + strand, within GFF696at 751.086 kb on + strand, within GFF696at 751.086 kb on + strand, within GFF696at 751.086 kb on + strand, within GFF696at 751.086 kb on + strand, within GFF696at 751.086 kb on + strand, within GFF696at 751.087 kb on - strand, within GFF696at 751.087 kb on - strand, within GFF696at 751.087 kb on - strand, within GFF696at 751.087 kb on - strand, within GFF696at 751.087 kb on - strand, within GFF696at 751.087 kb on - strand, within GFF696at 751.087 kb on - strand, within GFF696at 751.087 kb on - strand, within GFF696at 751.087 kb on - strand, within GFF696at 751.087 kb on - strand, within GFF696at 751.087 kb on - strand, within GFF696at 751.095 kb on + strand, within GFF696at 751.095 kb on + strand, within GFF696at 751.095 kb on + strand, within GFF696at 751.095 kb on + strand, within GFF696at 751.096 kb on - strand, within GFF696at 751.096 kb on - strand, within GFF696at 751.096 kb on - strand, within GFF696at 751.096 kb on - strand, within GFF696at 751.234 kb on + strand, within GFF696at 751.235 kb on - strand, within GFF696at 751.235 kb on - strand, within GFF696at 751.405 kb on - strand, within GFF696at 751.405 kb on - strand, within GFF696at 751.638 kb on + strand, within GFF696at 751.638 kb on + strand, within GFF696at 751.638 kb on + strand, within GFF696at 751.638 kb on + strand, within GFF696at 751.639 kb on - strand, within GFF696at 751.639 kb on - strand, within GFF696at 751.639 kb on - strand, within GFF696at 751.639 kb on - strand, within GFF696at 751.639 kb on - strand, within GFF696at 751.644 kb on + strand, within GFF696at 751.644 kb on + strand, within GFF696at 751.644 kb on + strand, within GFF696at 751.644 kb on + strand, within GFF696at 751.644 kb on + strand, within GFF696at 751.644 kb on + strand, within GFF696at 751.644 kb on + strand, within GFF696at 751.644 kb on + strand, within GFF696at 751.644 kb on + strand, within GFF696at 751.644 kb on + strand, within GFF696at 751.644 kb on + strand, within GFF696at 751.645 kb on - strand, within GFF696at 751.645 kb on - strand, within GFF696at 751.645 kb on - strand, within GFF696at 751.645 kb on - strand, within GFF696at 751.645 kb on - strand, within GFF696at 751.645 kb on - strand, within GFF696at 751.645 kb on - strand, within GFF696at 751.645 kb on - strand, within GFF696at 751.645 kb on - strand, within GFF696at 751.645 kb on - strand, within GFF696at 751.645 kb on - strand, within GFF696at 751.782 kb on + strand, within GFF696at 751.782 kb on + strand, within GFF696at 751.782 kb on + strand, within GFF696at 751.783 kb on - strand, within GFF696at 751.783 kb on - strand, within GFF696at 751.783 kb on - strand, within GFF696at 751.944 kb on + strand, within GFF696at 751.944 kb on + strand, within GFF696at 751.944 kb on + strand, within GFF696at 751.945 kb on - strand, within GFF696at 751.945 kb on - strand, within GFF696at 751.945 kb on - strand, within GFF696at 751.951 kb on - strand, within GFF696at 751.977 kb on + strand, within GFF696at 752.037 kb on + strand, within GFF696at 752.037 kb on + strand, within GFF696at 752.038 kb on - strand, within GFF696at 752.070 kb on + strand, within GFF696at 752.070 kb on + strand, within GFF696at 752.070 kb on + strand, within GFF696at 752.070 kb on + strand, within GFF696at 752.071 kb on - strand, within GFF696at 752.071 kb on - strand, within GFF696at 752.071 kb on - strand, within GFF696at 752.071 kb on - strand, within GFF696at 752.071 kb on - strand, within GFF696at 752.071 kb on - strand, within GFF696at 752.172 kb on + strand, within GFF696at 752.448 kb on + strandat 752.448 kb on + strandat 752.448 kb on + strandat 752.449 kb on - strandat 752.449 kb on - strandat 752.449 kb on - strandat 752.659 kb on + strand, within GFF697at 752.659 kb on + strand, within GFF697at 752.660 kb on - strand, within GFF697at 752.794 kb on + strand, within GFF697at 752.794 kb on + strand, within GFF697at 752.794 kb on + strand, within GFF697at 752.795 kb on - strand, within GFF697at 752.795 kb on - strand, within GFF697at 752.795 kb on - strand, within GFF697at 752.795 kb on - strand, within GFF697at 752.923 kb on + strand, within GFF697at 752.924 kb on - strand, within GFF697at 752.935 kb on + strand, within GFF697at 752.935 kb on + strand, within GFF697at 752.935 kb on + strand, within GFF697at 752.935 kb on + strand, within GFF697at 752.935 kb on + strand, within GFF697at 752.936 kb on - strand, within GFF697at 752.936 kb on - strand, within GFF697at 752.936 kb on - strand, within GFF697at 752.936 kb on - strand, within GFF697at 752.960 kb on - strand, within GFF697at 752.960 kb on - strand, within GFF697at 752.960 kb on - strand, within GFF697at 752.965 kb on + strand, within GFF697at 752.965 kb on + strand, within GFF697at 752.965 kb on + strand, within GFF697at 752.965 kb on + strand, within GFF697at 752.965 kb on + strand, within GFF697at 752.966 kb on - strand, within GFF697at 752.966 kb on - strand, within GFF697at 752.966 kb on - strand, within GFF697at 752.966 kb on - strand, within GFF697at 752.966 kb on - strand, within GFF697at 752.966 kb on - strand, within GFF697at 752.966 kb on - strand, within GFF697at 753.100 kb on + strand, within GFF697at 753.100 kb on + strand, within GFF697at 753.100 kb on + strand, within GFF697at 753.101 kb on - strand, within GFF697at 753.101 kb on - strand, within GFF697at 753.101 kb on - strand, within GFF697at 753.101 kb on - strand, within GFF697at 753.160 kb on + strandat 753.160 kb on + strandat 753.160 kb on + strandat 753.161 kb on - strandat 753.161 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4
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750,302 + GFF695 0.17 -1.2
750,302 + GFF695 0.17 -1.1
750,302 + GFF695 0.17 +3.6
750,303 - GFF695 0.17 +1.0
750,303 - GFF695 0.17 -0.4
750,311 + GFF695 0.18 +0.8
750,311 + GFF695 0.18 +0.5
750,311 + GFF695 0.18 -2.6
750,311 + GFF695 0.18 -1.8
750,311 + GFF695 0.18 +0.4
750,312 - GFF695 0.19 +1.5
750,312 - GFF695 0.19 +1.4
750,312 - GFF695 0.19 -2.2
750,312 - GFF695 0.19 -1.5
750,422 + GFF695 0.38 -2.4
750,422 + GFF695 0.38 +2.4
750,422 + GFF695 0.38 -2.4
750,422 + GFF695 0.38 +1.0
750,422 + GFF695 0.38 +0.7
750,422 + GFF695 0.38 +0.7
750,422 + GFF695 0.38 -2.0
750,423 - GFF695 0.38 -0.4
750,423 - GFF695 0.38 +3.6
750,423 - GFF695 0.38 -0.3
750,423 - GFF695 0.38 -0.7
750,423 - GFF695 0.38 +1.5
750,423 - GFF695 0.38 +0.2
750,423 - GFF695 0.38 -1.5
750,423 - GFF695 0.38 -1.3
750,423 - GFF695 0.38 -0.6
750,423 - GFF695 0.38 -3.7
750,423 - GFF695 0.38 -1.6
750,423 - GFF695 0.38 +0.5
750,423 - GFF695 0.38 -1.2
750,500 + GFF695 0.51 -1.9
750,500 + GFF695 0.51 -0.5
750,501 - GFF695 0.52 -1.4
750,501 - GFF695 0.52 -2.5
750,501 - GFF695 0.52 +0.1
750,548 + GFF695 0.60 -0.2
750,548 + GFF695 0.60 -2.8
750,548 + GFF695 0.60 -3.6
750,549 - GFF695 0.60 -0.3
750,549 - GFF695 0.60 -3.1
750,675 - GFF695 0.82 -0.3
750,758 + -1.3
750,758 + +0.5
750,759 - -1.3
750,759 - -1.0
750,759 - +0.1
750,876 + +0.2
750,876 + +1.0
750,877 - -0.9
750,877 - +1.0
750,877 - -1.1
750,877 - -2.2
750,877 - -0.0
750,877 - -0.6
750,877 - -0.9
751,086 + GFF696 0.10 +0.1
751,086 + GFF696 0.10 -0.6
751,086 + GFF696 0.10 -1.2
751,086 + GFF696 0.10 -2.4
751,086 + GFF696 0.10 -1.6
751,086 + GFF696 0.10 +0.3
751,086 + GFF696 0.10 -3.3
751,086 + GFF696 0.10 +0.7
751,086 + GFF696 0.10 -1.9
751,086 + GFF696 0.10 -0.1
751,086 + GFF696 0.10 -0.2
751,086 + GFF696 0.10 -0.6
751,086 + GFF696 0.10 +0.4
751,087 - GFF696 0.10 -0.3
751,087 - GFF696 0.10 -0.6
751,087 - GFF696 0.10 +0.7
751,087 - GFF696 0.10 -1.1
751,087 - GFF696 0.10 +0.2
751,087 - GFF696 0.10 -1.3
751,087 - GFF696 0.10 -1.4
751,087 - GFF696 0.10 -1.3
751,087 - GFF696 0.10 -1.1
751,087 - GFF696 0.10 -1.5
751,087 - GFF696 0.10 -0.6
751,095 + GFF696 0.11 -1.6
751,095 + GFF696 0.11 +0.8
751,095 + GFF696 0.11 -0.9
751,095 + GFF696 0.11 -1.2
751,096 - GFF696 0.11 +0.7
751,096 - GFF696 0.11 -4.4
751,096 - GFF696 0.11 -0.9
751,096 - GFF696 0.11 -0.4
751,234 + GFF696 0.20 +1.5
751,235 - GFF696 0.20 +0.9
751,235 - GFF696 0.20 -1.1
751,405 - GFF696 0.32 -2.0
751,405 - GFF696 0.32 -2.1
751,638 + GFF696 0.49 +0.6
751,638 + GFF696 0.49 +0.1
751,638 + GFF696 0.49 -3.5
751,638 + GFF696 0.49 +0.5
751,639 - GFF696 0.49 -1.9
751,639 - GFF696 0.49 +0.1
751,639 - GFF696 0.49 +0.7
751,639 - GFF696 0.49 +1.1
751,639 - GFF696 0.49 +0.8
751,644 + GFF696 0.49 +0.6
751,644 + GFF696 0.49 -2.0
751,644 + GFF696 0.49 -2.9
751,644 + GFF696 0.49 -1.2
751,644 + GFF696 0.49 -2.7
751,644 + GFF696 0.49 -1.8
751,644 + GFF696 0.49 -0.1
751,644 + GFF696 0.49 +0.4
751,644 + GFF696 0.49 -1.2
751,644 + GFF696 0.49 -0.6
751,644 + GFF696 0.49 +2.0
751,645 - GFF696 0.49 -2.4
751,645 - GFF696 0.49 -3.8
751,645 - GFF696 0.49 -0.1
751,645 - GFF696 0.49 +0.6
751,645 - GFF696 0.49 -1.5
751,645 - GFF696 0.49 +0.2
751,645 - GFF696 0.49 +0.1
751,645 - GFF696 0.49 +1.2
751,645 - GFF696 0.49 -2.3
751,645 - GFF696 0.49 -1.6
751,645 - GFF696 0.49 -2.2
751,782 + GFF696 0.59 +1.4
751,782 + GFF696 0.59 +0.1
751,782 + GFF696 0.59 -0.2
751,783 - GFF696 0.59 +0.2
751,783 - GFF696 0.59 -2.1
751,783 - GFF696 0.59 -0.1
751,944 + GFF696 0.70 -2.5
751,944 + GFF696 0.70 +2.5
751,944 + GFF696 0.70 -2.8
751,945 - GFF696 0.70 +0.1
751,945 - GFF696 0.70 -0.3
751,945 - GFF696 0.70 -4.8
751,951 - GFF696 0.71 +0.7
751,977 + GFF696 0.72 -1.1
752,037 + GFF696 0.77 +1.6
752,037 + GFF696 0.77 -2.1
752,038 - GFF696 0.77 -1.0
752,070 + GFF696 0.79 +2.7
752,070 + GFF696 0.79 +0.1
752,070 + GFF696 0.79 -1.3
752,070 + GFF696 0.79 +0.7
752,071 - GFF696 0.79 +1.7
752,071 - GFF696 0.79 -3.3
752,071 - GFF696 0.79 -1.8
752,071 - GFF696 0.79 -2.6
752,071 - GFF696 0.79 -1.6
752,071 - GFF696 0.79 -1.6
752,172 + GFF696 0.86 -3.3
752,448 + -1.9
752,448 + +0.3
752,448 + -0.9
752,449 - -0.6
752,449 - -1.3
752,449 - -3.0
752,659 + GFF697 0.34 -1.3
752,659 + GFF697 0.34 +0.4
752,660 - GFF697 0.34 -1.9
752,794 + GFF697 0.51 -1.3
752,794 + GFF697 0.51 +0.2
752,794 + GFF697 0.51 +0.3
752,795 - GFF697 0.51 -2.6
752,795 - GFF697 0.51 -1.6
752,795 - GFF697 0.51 -1.8
752,795 - GFF697 0.51 +0.6
752,923 + GFF697 0.66 -2.4
752,924 - GFF697 0.66 -0.1
752,935 + GFF697 0.68 -1.8
752,935 + GFF697 0.68 -1.3
752,935 + GFF697 0.68 -0.6
752,935 + GFF697 0.68 +2.4
752,935 + GFF697 0.68 +0.7
752,936 - GFF697 0.68 +1.8
752,936 - GFF697 0.68 -1.3
752,936 - GFF697 0.68 -0.7
752,936 - GFF697 0.68 +0.4
752,960 - GFF697 0.71 -1.9
752,960 - GFF697 0.71 -0.6
752,960 - GFF697 0.71 -2.1
752,965 + GFF697 0.71 -1.7
752,965 + GFF697 0.71 -2.3
752,965 + GFF697 0.71 -2.1
752,965 + GFF697 0.71 +1.2
752,965 + GFF697 0.71 -0.6
752,966 - GFF697 0.72 -1.7
752,966 - GFF697 0.72 -0.5
752,966 - GFF697 0.72 -0.2
752,966 - GFF697 0.72 +0.5
752,966 - GFF697 0.72 -2.3
752,966 - GFF697 0.72 +1.0
752,966 - GFF697 0.72 +1.0
753,100 + GFF697 0.88 +0.0
753,100 + GFF697 0.88 -0.3
753,100 + GFF697 0.88 +2.4
753,101 - GFF697 0.88 -0.0
753,101 - GFF697 0.88 +1.0
753,101 - GFF697 0.88 +0.3
753,101 - GFF697 0.88 -1.1
753,160 + +0.7
753,160 + -1.2
753,160 + +3.9
753,161 - -1.6
753,161 - +1.7

Or see this region's nucleotide sequence