Experiment: Community=Kojac gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6948 and GFF6949 are separated by 136 nucleotides GFF6949 and GFF6950 are separated by 1 nucleotides GFF6950 and GFF6951 are separated by 99 nucleotides
GFF6948 - Ornithine carbamoyltransferase (EC 2.1.3.3), at 25,026 to 25,529
GFF6948
GFF6949 - no description, at 25,666 to 26,319
GFF6949
GFF6950 - Acetoacetyl-CoA reductase (EC 1.1.1.36), at 26,321 to 27,040
GFF6950
GFF6951 - Alcohol dehydrogenase (EC 1.1.1.1), at 27,140 to 28,129
GFF6951
Position (kb) 26
27
28 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 25.330 kb on - strand, within GFF6948 at 25.330 kb on - strand, within GFF6948 at 25.591 kb on + strand at 25.591 kb on + strand at 25.837 kb on + strand, within GFF6949 at 25.838 kb on - strand, within GFF6949 at 26.023 kb on + strand, within GFF6949 at 26.024 kb on - strand, within GFF6949 at 26.252 kb on + strand, within GFF6949 at 26.253 kb on - strand, within GFF6949 at 26.756 kb on + strand, within GFF6950 at 26.757 kb on - strand, within GFF6950 at 26.757 kb on - strand, within GFF6950 at 26.852 kb on + strand, within GFF6950 at 26.853 kb on - strand, within GFF6950 at 27.029 kb on + strand at 27.029 kb on + strand at 27.029 kb on + strand at 27.029 kb on + strand at 27.029 kb on + strand at 27.030 kb on - strand at 27.030 kb on - strand at 27.030 kb on - strand at 27.030 kb on - strand at 27.082 kb on + strand at 27.168 kb on + strand at 27.168 kb on + strand at 27.169 kb on - strand at 27.400 kb on - strand, within GFF6951 at 27.459 kb on + strand, within GFF6951 at 27.460 kb on - strand, within GFF6951 at 27.643 kb on + strand, within GFF6951 at 27.644 kb on - strand, within GFF6951 at 27.644 kb on - strand, within GFF6951 at 27.646 kb on - strand, within GFF6951 at 27.646 kb on - strand, within GFF6951 at 27.734 kb on - strand, within GFF6951 at 27.734 kb on - strand, within GFF6951 at 27.734 kb on - strand, within GFF6951 at 27.734 kb on - strand, within GFF6951 at 27.793 kb on + strand, within GFF6951
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4 remove 25,330 - GFF6948 0.60 -0.4 25,330 - GFF6948 0.60 +2.1 25,591 + -3.7 25,591 + -1.2 25,837 + GFF6949 0.26 -1.0 25,838 - GFF6949 0.26 +0.1 26,023 + GFF6949 0.55 -0.2 26,024 - GFF6949 0.55 -2.2 26,252 + GFF6949 0.90 -1.7 26,253 - GFF6949 0.90 +0.0 26,756 + GFF6950 0.60 +2.0 26,757 - GFF6950 0.61 +0.3 26,757 - GFF6950 0.61 +0.0 26,852 + GFF6950 0.74 +0.8 26,853 - GFF6950 0.74 -3.0 27,029 + -0.8 27,029 + -0.2 27,029 + +0.4 27,029 + -2.0 27,029 + -1.2 27,030 - -2.2 27,030 - -0.1 27,030 - -2.4 27,030 - -0.6 27,082 + -2.0 27,168 + -0.0 27,168 + -0.4 27,169 - +1.0 27,400 - GFF6951 0.26 +0.0 27,459 + GFF6951 0.32 +0.1 27,460 - GFF6951 0.32 +1.6 27,643 + GFF6951 0.51 -1.5 27,644 - GFF6951 0.51 -1.5 27,644 - GFF6951 0.51 +0.4 27,646 - GFF6951 0.51 +1.1 27,646 - GFF6951 0.51 -0.6 27,734 - GFF6951 0.60 -1.5 27,734 - GFF6951 0.60 -3.4 27,734 - GFF6951 0.60 -0.6 27,734 - GFF6951 0.60 +1.4 27,793 + GFF6951 0.66 -0.4
Or see this region's nucleotide sequence