Experiment: Community=Kojac gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6942 and GFF6943 overlap by 4 nucleotides GFF6943 and GFF6944 are separated by 189 nucleotides GFF6944 and GFF6945 are separated by 101 nucleotides GFF6945 and GFF6946 overlap by 8 nucleotides
GFF6942 - Universal stress protein UspA and related nucleotide-binding proteins, at 17,256 to 18,113
GFF6942
GFF6943 - no description, at 18,110 to 18,499
GFF6943
GFF6944 - Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9) @ Fructose-6-phosphate phosphoketolase (EC 4.1.2.22), at 18,689 to 21,061
GFF6944
GFF6945 - Two-component transcriptional response regulator, OmpR family, at 21,163 to 21,891
GFF6945
GFF6946 - Sensory box histidine kinase/response regulator, at 21,884 to 24,001
GFF6946
Position (kb) 18
19
20
21
22 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 18.610 kb on - strand at 18.764 kb on + strand at 18.764 kb on + strand at 18.765 kb on - strand at 18.765 kb on - strand at 18.765 kb on - strand at 18.785 kb on + strand at 18.785 kb on + strand at 18.887 kb on + strand at 18.887 kb on + strand at 18.887 kb on + strand at 18.888 kb on - strand at 18.888 kb on - strand at 18.888 kb on - strand at 18.888 kb on - strand at 18.888 kb on - strand at 18.998 kb on + strand, within GFF6944 at 18.998 kb on + strand, within GFF6944 at 18.999 kb on - strand, within GFF6944 at 18.999 kb on - strand, within GFF6944 at 19.020 kb on + strand, within GFF6944 at 19.021 kb on - strand, within GFF6944 at 19.021 kb on - strand, within GFF6944 at 19.021 kb on - strand, within GFF6944 at 19.140 kb on - strand, within GFF6944 at 19.397 kb on + strand, within GFF6944 at 19.398 kb on - strand, within GFF6944 at 19.574 kb on + strand, within GFF6944 at 19.574 kb on + strand, within GFF6944 at 19.574 kb on + strand, within GFF6944 at 19.574 kb on + strand, within GFF6944 at 19.574 kb on + strand, within GFF6944 at 19.575 kb on - strand, within GFF6944 at 19.575 kb on - strand, within GFF6944 at 20.111 kb on + strand, within GFF6944 at 20.252 kb on + strand, within GFF6944 at 20.253 kb on - strand, within GFF6944 at 20.253 kb on - strand, within GFF6944 at 20.253 kb on - strand, within GFF6944 at 20.253 kb on - strand, within GFF6944 at 20.361 kb on - strand, within GFF6944 at 20.361 kb on - strand, within GFF6944 at 20.380 kb on + strand, within GFF6944 at 20.381 kb on - strand, within GFF6944 at 20.424 kb on - strand, within GFF6944 at 20.799 kb on - strand, within GFF6944 at 20.837 kb on + strand at 21.002 kb on + strand at 21.002 kb on + strand at 21.002 kb on + strand at 21.002 kb on + strand at 21.002 kb on + strand at 21.003 kb on - strand at 21.003 kb on - strand at 21.003 kb on - strand at 21.003 kb on - strand at 21.003 kb on - strand at 21.083 kb on + strand at 21.083 kb on + strand at 21.084 kb on - strand at 21.106 kb on + strand at 21.106 kb on + strand at 21.130 kb on + strand at 21.130 kb on + strand at 21.146 kb on + strand at 21.146 kb on + strand at 21.147 kb on - strand at 21.147 kb on - strand at 21.207 kb on + strand at 21.208 kb on - strand at 21.229 kb on + strand at 21.230 kb on - strand at 21.230 kb on - strand at 21.449 kb on + strand, within GFF6945 at 21.449 kb on + strand, within GFF6945 at 21.450 kb on - strand, within GFF6945 at 21.450 kb on - strand, within GFF6945 at 21.450 kb on - strand, within GFF6945 at 21.463 kb on + strand, within GFF6945 at 21.859 kb on + strand at 21.936 kb on + strand at 21.937 kb on - strand at 21.937 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4 remove 18,610 - -0.8 18,764 + +0.2 18,764 + +0.5 18,765 - +1.5 18,765 - -0.4 18,765 - +0.0 18,785 + -0.8 18,785 + +1.6 18,887 + -1.8 18,887 + -1.1 18,887 + +0.4 18,888 - -2.4 18,888 - -1.7 18,888 - -1.5 18,888 - +0.4 18,888 - -1.1 18,998 + GFF6944 0.13 -0.5 18,998 + GFF6944 0.13 -0.1 18,999 - GFF6944 0.13 -1.8 18,999 - GFF6944 0.13 +0.9 19,020 + GFF6944 0.14 -0.2 19,021 - GFF6944 0.14 -2.6 19,021 - GFF6944 0.14 +0.3 19,021 - GFF6944 0.14 -0.4 19,140 - GFF6944 0.19 +0.7 19,397 + GFF6944 0.30 -0.2 19,398 - GFF6944 0.30 +0.9 19,574 + GFF6944 0.37 -0.2 19,574 + GFF6944 0.37 +0.4 19,574 + GFF6944 0.37 -0.1 19,574 + GFF6944 0.37 +2.0 19,574 + GFF6944 0.37 -1.0 19,575 - GFF6944 0.37 +3.2 19,575 - GFF6944 0.37 -1.5 20,111 + GFF6944 0.60 +0.9 20,252 + GFF6944 0.66 +2.4 20,253 - GFF6944 0.66 -1.9 20,253 - GFF6944 0.66 +2.4 20,253 - GFF6944 0.66 +3.7 20,253 - GFF6944 0.66 +0.3 20,361 - GFF6944 0.70 +0.4 20,361 - GFF6944 0.70 -1.0 20,380 + GFF6944 0.71 -0.4 20,381 - GFF6944 0.71 -2.7 20,424 - GFF6944 0.73 -1.1 20,799 - GFF6944 0.89 -1.1 20,837 + -0.2 21,002 + +2.9 21,002 + -3.5 21,002 + -1.6 21,002 + -1.5 21,002 + +1.9 21,003 - -1.1 21,003 - -0.1 21,003 - +0.3 21,003 - -0.6 21,003 - +0.5 21,083 + +2.0 21,083 + -0.2 21,084 - +1.5 21,106 + -1.2 21,106 + -0.5 21,130 + -0.6 21,130 + +0.4 21,146 + -3.3 21,146 + +1.1 21,147 - -2.4 21,147 - +1.0 21,207 + -2.7 21,208 - -0.4 21,229 + -0.6 21,230 - +0.3 21,230 - +0.9 21,449 + GFF6945 0.39 -0.7 21,449 + GFF6945 0.39 +0.4 21,450 - GFF6945 0.39 -1.4 21,450 - GFF6945 0.39 -1.2 21,450 - GFF6945 0.39 -0.3 21,463 + GFF6945 0.41 -0.7 21,859 + -2.3 21,936 + -0.9 21,937 - +0.6 21,937 - -0.2
Or see this region's nucleotide sequence