Experiment: Community=Kojac gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6938 and GFF6939 overlap by 4 nucleotides GFF6939 and GFF6940 are separated by 44 nucleotides GFF6940 and GFF6941 are separated by 318 nucleotides
GFF6938 - Efflux transport system, outer membrane factor (OMF) lipoprotein, at 12,842 to 14,341
GFF6938
GFF6939 - ABC-type antimicrobial peptide transport system, permease component, at 14,338 to 15,480
GFF6939
GFF6940 - no description, at 15,525 to 16,061
GFF6940
GFF6941 - Two-component transcriptional response regulator, LuxR family, at 16,380 to 17,249
GFF6941
Position (kb) 14
15
16 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 13.451 kb on + strand, within GFF6938 at 13.451 kb on + strand, within GFF6938 at 13.452 kb on - strand, within GFF6938 at 13.547 kb on + strand, within GFF6938 at 13.547 kb on + strand, within GFF6938 at 13.911 kb on - strand, within GFF6938 at 14.175 kb on - strand, within GFF6938 at 14.345 kb on - strand at 14.486 kb on - strand, within GFF6939 at 14.572 kb on + strand, within GFF6939 at 14.573 kb on - strand, within GFF6939 at 14.611 kb on + strand, within GFF6939 at 14.611 kb on + strand, within GFF6939 at 14.612 kb on - strand, within GFF6939 at 14.612 kb on - strand, within GFF6939 at 14.612 kb on - strand, within GFF6939 at 14.665 kb on + strand, within GFF6939 at 14.665 kb on + strand, within GFF6939 at 14.666 kb on - strand, within GFF6939 at 14.698 kb on - strand, within GFF6939 at 14.698 kb on - strand, within GFF6939 at 14.914 kb on + strand, within GFF6939 at 14.932 kb on + strand, within GFF6939 at 14.932 kb on + strand, within GFF6939 at 14.962 kb on + strand, within GFF6939 at 15.076 kb on + strand, within GFF6939 at 15.079 kb on + strand, within GFF6939 at 15.079 kb on + strand, within GFF6939 at 15.079 kb on + strand, within GFF6939 at 15.079 kb on + strand, within GFF6939 at 15.079 kb on + strand, within GFF6939 at 15.080 kb on - strand, within GFF6939 at 15.080 kb on - strand, within GFF6939 at 15.080 kb on - strand, within GFF6939 at 15.085 kb on + strand, within GFF6939 at 15.085 kb on + strand, within GFF6939 at 15.086 kb on - strand, within GFF6939 at 15.086 kb on - strand, within GFF6939 at 15.169 kb on + strand, within GFF6939 at 15.170 kb on - strand, within GFF6939 at 15.170 kb on - strand, within GFF6939 at 15.170 kb on - strand, within GFF6939 at 15.349 kb on + strand, within GFF6939 at 15.349 kb on + strand, within GFF6939 at 15.349 kb on + strand, within GFF6939 at 15.350 kb on - strand, within GFF6939 at 15.425 kb on - strand at 15.425 kb on - strand at 15.706 kb on + strand, within GFF6940 at 15.706 kb on + strand, within GFF6940 at 15.706 kb on + strand, within GFF6940 at 15.857 kb on - strand, within GFF6940 at 15.857 kb on - strand, within GFF6940 at 15.964 kb on + strand, within GFF6940 at 15.964 kb on + strand, within GFF6940 at 15.964 kb on + strand, within GFF6940 at 15.965 kb on - strand, within GFF6940 at 15.965 kb on - strand, within GFF6940 at 15.965 kb on - strand, within GFF6940 at 16.285 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4 remove 13,451 + GFF6938 0.41 -2.0 13,451 + GFF6938 0.41 -1.0 13,452 - GFF6938 0.41 -0.0 13,547 + GFF6938 0.47 -0.8 13,547 + GFF6938 0.47 -2.2 13,911 - GFF6938 0.71 -0.6 14,175 - GFF6938 0.89 -0.2 14,345 - -1.0 14,486 - GFF6939 0.13 +0.6 14,572 + GFF6939 0.20 -1.7 14,573 - GFF6939 0.21 -0.6 14,611 + GFF6939 0.24 -0.6 14,611 + GFF6939 0.24 +1.1 14,612 - GFF6939 0.24 -0.8 14,612 - GFF6939 0.24 -1.4 14,612 - GFF6939 0.24 +0.8 14,665 + GFF6939 0.29 +4.8 14,665 + GFF6939 0.29 -1.6 14,666 - GFF6939 0.29 -1.1 14,698 - GFF6939 0.31 +1.0 14,698 - GFF6939 0.31 +0.8 14,914 + GFF6939 0.50 +0.6 14,932 + GFF6939 0.52 -1.5 14,932 + GFF6939 0.52 -0.3 14,962 + GFF6939 0.55 -2.2 15,076 + GFF6939 0.65 -0.4 15,079 + GFF6939 0.65 +2.7 15,079 + GFF6939 0.65 -1.1 15,079 + GFF6939 0.65 +0.3 15,079 + GFF6939 0.65 +1.2 15,079 + GFF6939 0.65 +0.6 15,080 - GFF6939 0.65 +0.4 15,080 - GFF6939 0.65 -0.1 15,080 - GFF6939 0.65 +1.3 15,085 + GFF6939 0.65 +2.1 15,085 + GFF6939 0.65 -0.2 15,086 - GFF6939 0.65 +0.4 15,086 - GFF6939 0.65 -0.6 15,169 + GFF6939 0.73 -0.8 15,170 - GFF6939 0.73 +2.7 15,170 - GFF6939 0.73 -1.5 15,170 - GFF6939 0.73 +0.6 15,349 + GFF6939 0.88 +1.2 15,349 + GFF6939 0.88 +0.8 15,349 + GFF6939 0.88 -0.2 15,350 - GFF6939 0.89 +1.1 15,425 - +1.2 15,425 - -2.3 15,706 + GFF6940 0.34 +1.5 15,706 + GFF6940 0.34 +1.1 15,706 + GFF6940 0.34 +2.1 15,857 - GFF6940 0.62 -0.2 15,857 - GFF6940 0.62 +0.9 15,964 + GFF6940 0.82 +0.2 15,964 + GFF6940 0.82 +0.0 15,964 + GFF6940 0.82 -0.2 15,965 - GFF6940 0.82 +1.4 15,965 - GFF6940 0.82 -0.3 15,965 - GFF6940 0.82 -0.0 16,285 + -0.4
Or see this region's nucleotide sequence