Strain Fitness in Variovorax sp. SCN45 around GFF693

Experiment: Community=Kojac gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF692 and GFF693 overlap by 4 nucleotidesGFF693 and GFF694 are separated by 18 nucleotidesGFF694 and GFF695 overlap by 4 nucleotides GFF692 - BUG/TctC family periplasmic protein, at 747,318 to 748,313 GFF692 GFF693 - BUG/TctC family periplasmic protein, at 748,310 to 749,326 GFF693 GFF694 - 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (EC 3.7.1.-), at 749,345 to 750,208 GFF694 GFF695 - Cytochrome B561, at 750,205 to 750,777 GFF695 Position (kb) 748 749 750Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 747.433 kb on + strand, within GFF692at 747.600 kb on + strand, within GFF692at 747.601 kb on - strand, within GFF692at 747.601 kb on - strand, within GFF692at 747.601 kb on - strand, within GFF692at 747.612 kb on + strand, within GFF692at 747.613 kb on - strand, within GFF692at 747.613 kb on - strand, within GFF692at 747.613 kb on - strand, within GFF692at 747.667 kb on - strand, within GFF692at 747.667 kb on - strand, within GFF692at 747.774 kb on + strand, within GFF692at 747.775 kb on - strand, within GFF692at 747.805 kb on - strand, within GFF692at 747.805 kb on - strand, within GFF692at 747.805 kb on - strand, within GFF692at 747.805 kb on - strand, within GFF692at 747.805 kb on - strand, within GFF692at 747.805 kb on - strand, within GFF692at 747.805 kb on - strand, within GFF692at 747.805 kb on - strand, within GFF692at 747.805 kb on - strand, within GFF692at 747.805 kb on - strand, within GFF692at 747.805 kb on - strand, within GFF692at 747.805 kb on - strand, within GFF692at 747.805 kb on - strand, within GFF692at 747.805 kb on - strand, within GFF692at 747.805 kb on - strand, within GFF692at 747.805 kb on - strand, within GFF692at 747.805 kb on - strand, within GFF692at 747.805 kb on - strand, within GFF692at 747.805 kb on - strand, within GFF692at 747.840 kb on + strand, within GFF692at 747.840 kb on + strand, within GFF692at 747.840 kb on + strand, within GFF692at 747.891 kb on + strand, within GFF692at 747.891 kb on + strand, within GFF692at 747.891 kb on + strand, within GFF692at 747.891 kb on + strand, within GFF692at 747.891 kb on + strand, within GFF692at 747.891 kb on + strand, within GFF692at 747.892 kb on - strand, within GFF692at 747.892 kb on - strand, within GFF692at 747.942 kb on + strand, within GFF692at 747.942 kb on + strand, within GFF692at 747.942 kb on + strand, within GFF692at 747.942 kb on + strand, within GFF692at 747.942 kb on + strand, within GFF692at 747.942 kb on + strand, within GFF692at 747.942 kb on + strand, within GFF692at 747.942 kb on + strand, within GFF692at 747.942 kb on + strand, within GFF692at 747.942 kb on + strand, within GFF692at 747.942 kb on + strand, within GFF692at 747.943 kb on - strand, within GFF692at 747.943 kb on - strand, within GFF692at 747.943 kb on - strand, within GFF692at 747.943 kb on - strand, within GFF692at 747.943 kb on - strand, within GFF692at 747.943 kb on - strand, within GFF692at 747.943 kb on - strand, within GFF692at 747.943 kb on - strand, within GFF692at 747.943 kb on - strand, within GFF692at 747.943 kb on - strand, within GFF692at 748.069 kb on - strand, within GFF692at 748.069 kb on - strand, within GFF692at 748.104 kb on + strand, within GFF692at 748.104 kb on + strand, within GFF692at 748.105 kb on - strand, within GFF692at 748.105 kb on - strand, within GFF692at 748.194 kb on + strand, within GFF692at 748.209 kb on + strand, within GFF692at 748.210 kb on - strand, within GFF692at 748.210 kb on - strand, within GFF692at 748.210 kb on - strand, within GFF692at 748.210 kb on - strand, within GFF692at 748.263 kb on + strandat 748.263 kb on + strandat 748.263 kb on + strandat 748.263 kb on + strandat 748.263 kb on + strandat 748.264 kb on - strandat 748.264 kb on - strandat 748.264 kb on - strandat 748.607 kb on + strand, within GFF693at 748.607 kb on + strand, within GFF693at 748.607 kb on + strand, within GFF693at 748.619 kb on + strand, within GFF693at 748.619 kb on + strand, within GFF693at 748.619 kb on + strand, within GFF693at 748.619 kb on + strand, within GFF693at 748.619 kb on + strand, within GFF693at 748.619 kb on + strand, within GFF693at 748.619 kb on + strand, within GFF693at 748.619 kb on + strand, within GFF693at 748.619 kb on + strand, within GFF693at 748.619 kb on + strand, within GFF693at 748.619 kb on + strand, within GFF693at 748.619 kb on + strand, within GFF693at 748.619 kb on + strand, within GFF693at 748.619 kb on + strand, within GFF693at 748.620 kb on - strand, within GFF693at 748.620 kb on - strand, within GFF693at 748.620 kb on - strand, within GFF693at 748.620 kb on - strand, within GFF693at 748.620 kb on - strand, within GFF693at 748.620 kb on - strand, within GFF693at 748.620 kb on - strand, within GFF693at 748.673 kb on + strand, within GFF693at 748.674 kb on - strand, within GFF693at 748.781 kb on + strand, within GFF693at 748.781 kb on + strand, within GFF693at 748.781 kb on + strand, within GFF693at 748.781 kb on + strand, within GFF693at 748.781 kb on + strand, within GFF693at 748.781 kb on + strand, within GFF693at 748.781 kb on + strand, within GFF693at 748.782 kb on - strand, within GFF693at 748.782 kb on - strand, within GFF693at 748.782 kb on - strand, within GFF693at 748.782 kb on - strand, within GFF693at 748.782 kb on - strand, within GFF693at 748.811 kb on + strand, within GFF693at 748.811 kb on + strand, within GFF693at 748.811 kb on + strand, within GFF693at 748.811 kb on + strand, within GFF693at 748.811 kb on + strand, within GFF693at 748.811 kb on + strand, within GFF693at 748.811 kb on + strand, within GFF693at 748.811 kb on + strand, within GFF693at 748.811 kb on + strand, within GFF693at 748.811 kb on + strand, within GFF693at 748.811 kb on + strand, within GFF693at 748.811 kb on + strand, within GFF693at 748.811 kb on + strand, within GFF693at 748.811 kb on + strand, within GFF693at 748.812 kb on - strand, within GFF693at 748.812 kb on - strand, within GFF693at 748.812 kb on - strand, within GFF693at 748.812 kb on - strand, within GFF693at 748.812 kb on - strand, within GFF693at 748.812 kb on - strand, within GFF693at 748.812 kb on - strand, within GFF693at 748.812 kb on - strand, within GFF693at 748.812 kb on - strand, within GFF693at 748.812 kb on - strand, within GFF693at 748.812 kb on - strand, within GFF693at 748.812 kb on - strand, within GFF693at 748.847 kb on + strand, within GFF693at 748.847 kb on + strand, within GFF693at 748.847 kb on + strand, within GFF693at 748.847 kb on + strand, within GFF693at 748.847 kb on + strand, within GFF693at 748.848 kb on - strand, within GFF693at 748.848 kb on - strand, within GFF693at 748.848 kb on - strand, within GFF693at 748.848 kb on - strand, within GFF693at 748.848 kb on - strand, within GFF693at 748.848 kb on - strand, within GFF693at 748.848 kb on - strand, within GFF693at 748.898 kb on + strand, within GFF693at 748.898 kb on + strand, within GFF693at 748.898 kb on + strand, within GFF693at 748.898 kb on + strand, within GFF693at 748.898 kb on + strand, within GFF693at 748.898 kb on + strand, within GFF693at 748.899 kb on - strand, within GFF693at 748.899 kb on - strand, within GFF693at 748.949 kb on + strand, within GFF693at 748.949 kb on + strand, within GFF693at 748.949 kb on + strand, within GFF693at 748.949 kb on + strand, within GFF693at 748.950 kb on - strand, within GFF693at 748.950 kb on - strand, within GFF693at 748.950 kb on - strand, within GFF693at 748.950 kb on - strand, within GFF693at 748.952 kb on + strand, within GFF693at 748.952 kb on + strand, within GFF693at 748.952 kb on + strand, within GFF693at 748.952 kb on + strand, within GFF693at 748.953 kb on - strand, within GFF693at 748.953 kb on - strand, within GFF693at 748.953 kb on - strand, within GFF693at 748.953 kb on - strand, within GFF693at 748.953 kb on - strand, within GFF693at 748.953 kb on - strand, within GFF693at 748.953 kb on - strand, within GFF693at 749.001 kb on + strand, within GFF693at 749.001 kb on + strand, within GFF693at 749.001 kb on + strand, within GFF693at 749.001 kb on + strand, within GFF693at 749.001 kb on + strand, within GFF693at 749.002 kb on - strand, within GFF693at 749.002 kb on - strand, within GFF693at 749.002 kb on - strand, within GFF693at 749.002 kb on - strand, within GFF693at 749.002 kb on - strand, within GFF693at 749.111 kb on + strand, within GFF693at 749.111 kb on + strand, within GFF693at 749.111 kb on + strand, within GFF693at 749.112 kb on - strand, within GFF693at 749.112 kb on - strand, within GFF693at 749.216 kb on + strand, within GFF693at 749.270 kb on + strandat 749.270 kb on + strandat 749.270 kb on + strandat 749.270 kb on + strandat 749.270 kb on + strandat 749.270 kb on + strandat 749.270 kb on + strandat 749.270 kb on + strandat 749.270 kb on + strandat 749.271 kb on - strandat 749.271 kb on - strandat 749.271 kb on - strandat 749.271 kb on - strandat 749.271 kb on - strandat 749.394 kb on + strandat 749.394 kb on + strandat 749.394 kb on + strandat 749.395 kb on - strandat 749.395 kb on - strandat 749.748 kb on - strand, within GFF694at 750.302 kb on + strand, within GFF695at 750.302 kb on + strand, within GFF695at 750.302 kb on + strand, within GFF695at 750.303 kb on - strand, within GFF695at 750.303 kb on - strand, within GFF695at 750.311 kb on + strand, within GFF695at 750.311 kb on + strand, within GFF695at 750.311 kb on + strand, within GFF695at 750.311 kb on + strand, within GFF695at 750.311 kb on + strand, within GFF695at 750.312 kb on - strand, within GFF695at 750.312 kb on - strand, within GFF695at 750.312 kb on - strand, within GFF695at 750.312 kb on - strand, within GFF695

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4
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747,433 + GFF692 0.12 +3.1
747,600 + GFF692 0.28 -0.1
747,601 - GFF692 0.28 -1.3
747,601 - GFF692 0.28 -2.2
747,601 - GFF692 0.28 -0.1
747,612 + GFF692 0.30 -0.6
747,613 - GFF692 0.30 -0.8
747,613 - GFF692 0.30 -2.9
747,613 - GFF692 0.30 +1.6
747,667 - GFF692 0.35 -2.0
747,667 - GFF692 0.35 +0.0
747,774 + GFF692 0.46 +1.9
747,775 - GFF692 0.46 +1.5
747,805 - GFF692 0.49 -3.9
747,805 - GFF692 0.49 -0.4
747,805 - GFF692 0.49 -0.2
747,805 - GFF692 0.49 -1.4
747,805 - GFF692 0.49 -0.5
747,805 - GFF692 0.49 +0.7
747,805 - GFF692 0.49 -2.3
747,805 - GFF692 0.49 +1.7
747,805 - GFF692 0.49 -2.1
747,805 - GFF692 0.49 +2.6
747,805 - GFF692 0.49 -0.1
747,805 - GFF692 0.49 -1.8
747,805 - GFF692 0.49 -1.8
747,805 - GFF692 0.49 +1.7
747,805 - GFF692 0.49 -1.9
747,805 - GFF692 0.49 -0.4
747,805 - GFF692 0.49 -0.1
747,805 - GFF692 0.49 -0.3
747,805 - GFF692 0.49 +0.6
747,840 + GFF692 0.52 +2.4
747,840 + GFF692 0.52 -2.4
747,840 + GFF692 0.52 +0.4
747,891 + GFF692 0.58 +1.9
747,891 + GFF692 0.58 -3.4
747,891 + GFF692 0.58 -0.3
747,891 + GFF692 0.58 -0.2
747,891 + GFF692 0.58 +1.9
747,891 + GFF692 0.58 +0.1
747,892 - GFF692 0.58 -1.6
747,892 - GFF692 0.58 +1.1
747,942 + GFF692 0.63 -1.1
747,942 + GFF692 0.63 -0.4
747,942 + GFF692 0.63 -0.3
747,942 + GFF692 0.63 +1.3
747,942 + GFF692 0.63 -0.6
747,942 + GFF692 0.63 -1.5
747,942 + GFF692 0.63 -2.5
747,942 + GFF692 0.63 -1.8
747,942 + GFF692 0.63 +1.1
747,942 + GFF692 0.63 +0.7
747,942 + GFF692 0.63 -3.4
747,943 - GFF692 0.63 -1.5
747,943 - GFF692 0.63 -0.3
747,943 - GFF692 0.63 -0.5
747,943 - GFF692 0.63 +1.0
747,943 - GFF692 0.63 -1.9
747,943 - GFF692 0.63 +0.2
747,943 - GFF692 0.63 -0.4
747,943 - GFF692 0.63 +0.5
747,943 - GFF692 0.63 +0.3
747,943 - GFF692 0.63 +0.4
748,069 - GFF692 0.75 -0.2
748,069 - GFF692 0.75 +0.5
748,104 + GFF692 0.79 -0.8
748,104 + GFF692 0.79 -3.3
748,105 - GFF692 0.79 -4.0
748,105 - GFF692 0.79 +0.4
748,194 + GFF692 0.88 -0.8
748,209 + GFF692 0.89 -0.4
748,210 - GFF692 0.90 +1.8
748,210 - GFF692 0.90 -2.0
748,210 - GFF692 0.90 +1.1
748,210 - GFF692 0.90 -1.3
748,263 + +1.9
748,263 + +0.9
748,263 + +2.1
748,263 + +2.4
748,263 + -2.0
748,264 - -2.0
748,264 - -2.2
748,264 - -0.8
748,607 + GFF693 0.29 -1.3
748,607 + GFF693 0.29 -3.4
748,607 + GFF693 0.29 -0.1
748,619 + GFF693 0.30 +0.7
748,619 + GFF693 0.30 +1.3
748,619 + GFF693 0.30 -2.0
748,619 + GFF693 0.30 -0.2
748,619 + GFF693 0.30 -2.0
748,619 + GFF693 0.30 -0.6
748,619 + GFF693 0.30 -0.4
748,619 + GFF693 0.30 +0.2
748,619 + GFF693 0.30 +1.0
748,619 + GFF693 0.30 -3.1
748,619 + GFF693 0.30 -0.6
748,619 + GFF693 0.30 +1.4
748,619 + GFF693 0.30 -2.4
748,619 + GFF693 0.30 -1.3
748,620 - GFF693 0.30 -1.9
748,620 - GFF693 0.30 -0.4
748,620 - GFF693 0.30 -2.7
748,620 - GFF693 0.30 -0.9
748,620 - GFF693 0.30 -3.3
748,620 - GFF693 0.30 +0.2
748,620 - GFF693 0.30 -0.4
748,673 + GFF693 0.36 +1.9
748,674 - GFF693 0.36 -0.1
748,781 + GFF693 0.46 -3.8
748,781 + GFF693 0.46 -0.9
748,781 + GFF693 0.46 -0.5
748,781 + GFF693 0.46 -1.9
748,781 + GFF693 0.46 -2.1
748,781 + GFF693 0.46 -0.9
748,781 + GFF693 0.46 -0.6
748,782 - GFF693 0.46 -1.1
748,782 - GFF693 0.46 -2.8
748,782 - GFF693 0.46 +0.2
748,782 - GFF693 0.46 -1.6
748,782 - GFF693 0.46 -0.3
748,811 + GFF693 0.49 -0.8
748,811 + GFF693 0.49 -0.9
748,811 + GFF693 0.49 -2.9
748,811 + GFF693 0.49 -4.3
748,811 + GFF693 0.49 -0.7
748,811 + GFF693 0.49 -0.9
748,811 + GFF693 0.49 +0.1
748,811 + GFF693 0.49 +1.8
748,811 + GFF693 0.49 -0.5
748,811 + GFF693 0.49 -1.3
748,811 + GFF693 0.49 +1.2
748,811 + GFF693 0.49 -0.1
748,811 + GFF693 0.49 -0.5
748,811 + GFF693 0.49 -0.1
748,812 - GFF693 0.49 -2.3
748,812 - GFF693 0.49 -0.8
748,812 - GFF693 0.49 +0.5
748,812 - GFF693 0.49 -0.1
748,812 - GFF693 0.49 +1.4
748,812 - GFF693 0.49 -0.9
748,812 - GFF693 0.49 -1.0
748,812 - GFF693 0.49 -0.2
748,812 - GFF693 0.49 -1.8
748,812 - GFF693 0.49 -0.2
748,812 - GFF693 0.49 -0.2
748,812 - GFF693 0.49 -0.6
748,847 + GFF693 0.53 -1.8
748,847 + GFF693 0.53 -0.8
748,847 + GFF693 0.53 +0.6
748,847 + GFF693 0.53 -2.0
748,847 + GFF693 0.53 -2.2
748,848 - GFF693 0.53 -1.6
748,848 - GFF693 0.53 +3.1
748,848 - GFF693 0.53 -0.2
748,848 - GFF693 0.53 +1.0
748,848 - GFF693 0.53 +1.4
748,848 - GFF693 0.53 -0.9
748,848 - GFF693 0.53 -0.6
748,898 + GFF693 0.58 -1.9
748,898 + GFF693 0.58 -2.2
748,898 + GFF693 0.58 +0.6
748,898 + GFF693 0.58 +1.7
748,898 + GFF693 0.58 +0.0
748,898 + GFF693 0.58 -0.6
748,899 - GFF693 0.58 -2.0
748,899 - GFF693 0.58 -2.9
748,949 + GFF693 0.63 +2.2
748,949 + GFF693 0.63 -2.6
748,949 + GFF693 0.63 -0.9
748,949 + GFF693 0.63 -1.6
748,950 - GFF693 0.63 -1.5
748,950 - GFF693 0.63 +0.7
748,950 - GFF693 0.63 +0.7
748,950 - GFF693 0.63 -0.3
748,952 + GFF693 0.63 -0.8
748,952 + GFF693 0.63 -3.2
748,952 + GFF693 0.63 +0.4
748,952 + GFF693 0.63 -1.1
748,953 - GFF693 0.63 -1.5
748,953 - GFF693 0.63 -1.9
748,953 - GFF693 0.63 +0.5
748,953 - GFF693 0.63 -1.8
748,953 - GFF693 0.63 +0.1
748,953 - GFF693 0.63 -1.5
748,953 - GFF693 0.63 +0.6
749,001 + GFF693 0.68 +0.6
749,001 + GFF693 0.68 +0.1
749,001 + GFF693 0.68 +2.6
749,001 + GFF693 0.68 -0.3
749,001 + GFF693 0.68 -0.6
749,002 - GFF693 0.68 +0.8
749,002 - GFF693 0.68 +0.2
749,002 - GFF693 0.68 -2.8
749,002 - GFF693 0.68 -0.6
749,002 - GFF693 0.68 -1.3
749,111 + GFF693 0.79 +0.7
749,111 + GFF693 0.79 -1.7
749,111 + GFF693 0.79 -0.6
749,112 - GFF693 0.79 +0.4
749,112 - GFF693 0.79 -2.0
749,216 + GFF693 0.89 +1.8
749,270 + +0.1
749,270 + +2.8
749,270 + -1.9
749,270 + +0.4
749,270 + +0.3
749,270 + -2.7
749,270 + +0.4
749,270 + -0.5
749,270 + -0.6
749,271 - -1.0
749,271 - +0.0
749,271 - +0.7
749,271 - +2.2
749,271 - +2.0
749,394 + -0.1
749,394 + -0.7
749,394 + -0.7
749,395 - -3.0
749,395 - -2.4
749,748 - GFF694 0.47 +0.3
750,302 + GFF695 0.17 -1.2
750,302 + GFF695 0.17 -1.1
750,302 + GFF695 0.17 +3.6
750,303 - GFF695 0.17 +1.0
750,303 - GFF695 0.17 -0.4
750,311 + GFF695 0.18 +0.8
750,311 + GFF695 0.18 +0.5
750,311 + GFF695 0.18 -2.6
750,311 + GFF695 0.18 -1.8
750,311 + GFF695 0.18 +0.4
750,312 - GFF695 0.19 +1.5
750,312 - GFF695 0.19 +1.4
750,312 - GFF695 0.19 -2.2
750,312 - GFF695 0.19 -1.5

Or see this region's nucleotide sequence