Strain Fitness in Variovorax sp. SCN45 around GFF6899

Experiment: Community=Kojac gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Kojac gum; Passage=4
32,343	+		GFF6898	0.71	-3.2
32,343	+		GFF6898	0.71	+1.0
32,343	+		GFF6898	0.71	+0.1
32,343	+		GFF6898	0.71	+0.0
32,343	+		GFF6898	0.71	-0.3
32,344	-		GFF6898	0.72	+0.8
32,344	-		GFF6898	0.72	+0.3
32,344	-		GFF6898	0.72	-1.6
32,344	-		GFF6898	0.72	+0.6
32,344	-		GFF6898	0.72	-1.4
32,344	-		GFF6898	0.72	+0.7
32,541	+		GFF6898	0.79	-3.9
32,541	+		GFF6898	0.79	-3.4
32,541	+		GFF6898	0.79	-2.4
32,541	+		GFF6898	0.79	-2.4
32,541	+		GFF6898	0.79	+2.0
32,541	+		GFF6898	0.79	+1.1
32,542	-		GFF6898	0.79	+0.3
32,542	-		GFF6898	0.79	-0.8
32,542	-		GFF6898	0.79	-0.8
32,542	-		GFF6898	0.79	+1.0
32,542	-		GFF6898	0.79	+0.0
32,542	-		GFF6898	0.79	-2.9
32,542	-		GFF6898	0.79	-1.8
32,622	+		GFF6898	0.82	-2.0
32,622	+		GFF6898	0.82	-0.5
32,623	-		GFF6898	0.82	-1.1
32,623	-		GFF6898	0.82	+0.9
32,775	-		GFF6898	0.88	-0.8
32,775	-		GFF6898	0.88	+1.3
32,802	+		GFF6898	0.89	-2.3
32,802	+		GFF6898	0.89	+0.7
32,802	+		GFF6898	0.89	-3.2
32,803	-		GFF6898	0.89	-3.2
32,884	+				+0.7
32,916	+				-0.4
32,916	+				-1.8
32,917	-				-0.4
32,917	-				+0.5
32,917	-				-1.6
32,917	-				-0.2
32,917	-				+0.7
32,961	+				+0.0
33,030	+				-1.1
33,030	+				-0.2
33,030	+				+1.2
33,031	-				-0.1
33,031	-				+0.5
33,031	-				+0.7
33,356	+		GFF6899	0.13	+1.3
33,461	+		GFF6899	0.18	-2.6
33,461	+		GFF6899	0.18	-0.6
33,461	+		GFF6899	0.18	+0.0
33,462	-		GFF6899	0.18	-2.3
33,462	-		GFF6899	0.18	-2.6
33,462	-		GFF6899	0.18	+0.5
33,462	-		GFF6899	0.18	-1.6
33,462	-		GFF6899	0.18	-0.5
33,462	-		GFF6899	0.18	-0.5
33,462	-		GFF6899	0.18	-1.1
33,491	+		GFF6899	0.19	+1.3
33,491	+		GFF6899	0.19	-1.7
33,491	+		GFF6899	0.19	-1.6
33,491	+		GFF6899	0.19	-1.6
33,492	-		GFF6899	0.19	-1.1
33,492	-		GFF6899	0.19	-1.0
33,492	-		GFF6899	0.19	+3.1
33,497	+		GFF6899	0.20	-0.5
33,497	+		GFF6899	0.20	-1.6
33,497	+		GFF6899	0.20	-2.5
33,497	+		GFF6899	0.20	-1.4
33,497	+		GFF6899	0.20	+3.7
33,497	+		GFF6899	0.20	-0.0
33,498	-		GFF6899	0.20	+0.3
33,498	-		GFF6899	0.20	-0.5
33,498	-		GFF6899	0.20	+0.6
33,498	-		GFF6899	0.20	-0.3
33,726	-		GFF6899	0.31	-3.0
33,747	-		GFF6899	0.32	+1.3
33,747	-		GFF6899	0.32	+0.7
33,764	+		GFF6899	0.32	+0.5
33,764	+		GFF6899	0.32	-2.4
33,764	+		GFF6899	0.32	+2.9
33,764	+		GFF6899	0.32	+1.2
33,764	+		GFF6899	0.32	-0.9
33,764	+		GFF6899	0.32	-2.8
33,764	+		GFF6899	0.32	+2.9
33,764	+		GFF6899	0.32	-0.3
33,764	+		GFF6899	0.32	-1.5
33,765	-		GFF6899	0.33	-1.6
33,765	-		GFF6899	0.33	-2.0
33,765	-		GFF6899	0.33	+0.9
33,765	-		GFF6899	0.33	-1.5
33,765	-		GFF6899	0.33	-0.8
33,863	+		GFF6899	0.37	-3.1
33,864	-		GFF6899	0.37	-0.8
33,864	-		GFF6899	0.37	-0.3
33,864	-		GFF6899	0.37	+0.1
33,864	-		GFF6899	0.37	+0.5
33,864	-		GFF6899	0.37	+0.0
33,864	-		GFF6899	0.37	-0.8
33,984	-		GFF6899	0.43	-0.4
33,984	-		GFF6899	0.43	-1.4
34,004	+		GFF6899	0.44	-0.3
34,005	-		GFF6899	0.44	-1.9
34,079	+		GFF6899	0.48	-1.0
34,079	+		GFF6899	0.48	+0.4
34,079	+		GFF6899	0.48	+0.3
34,079	+		GFF6899	0.48	-0.1
34,079	+		GFF6899	0.48	+0.5
34,079	+		GFF6899	0.48	+0.9
34,079	+		GFF6899	0.48	-1.2
34,079	+		GFF6899	0.48	+0.9
34,080	-		GFF6899	0.48	-1.8
34,080	-		GFF6899	0.48	+1.0
34,080	-		GFF6899	0.48	-0.3
34,080	-		GFF6899	0.48	-0.2
34,080	-		GFF6899	0.48	-0.5
34,080	-		GFF6899	0.48	-2.0
34,085	+		GFF6899	0.48	+1.7
34,085	+		GFF6899	0.48	+2.1
34,085	+		GFF6899	0.48	+1.1
34,085	+		GFF6899	0.48	-1.9
34,085	+		GFF6899	0.48	-0.9
34,086	-		GFF6899	0.48	-0.2
34,086	-		GFF6899	0.48	+0.0
34,086	-		GFF6899	0.48	+1.3
34,086	-		GFF6899	0.48	+0.9
34,086	-		GFF6899	0.48	-0.7
34,178	+		GFF6899	0.52	+0.2
34,178	+		GFF6899	0.52	+1.0
34,178	+		GFF6899	0.52	+1.7
34,179	-		GFF6899	0.53	+0.1
34,179	-		GFF6899	0.53	-0.6
34,179	-		GFF6899	0.53	-0.7
34,217	+		GFF6899	0.54	-2.9
34,217	+		GFF6899	0.54	+0.9
34,217	+		GFF6899	0.54	-0.8
34,217	+		GFF6899	0.54	+1.4
34,217	+		GFF6899	0.54	+2.7
34,217	+		GFF6899	0.54	+0.3
34,218	-		GFF6899	0.54	-1.4
34,218	-		GFF6899	0.54	-0.5
34,218	-		GFF6899	0.54	-0.8
34,218	-		GFF6899	0.54	+1.0
34,218	-		GFF6899	0.54	-1.3
34,218	-		GFF6899	0.54	+1.0
34,218	-		GFF6899	0.54	+1.3
34,304	+		GFF6899	0.59	-0.7
34,304	+		GFF6899	0.59	-1.2
34,304	+		GFF6899	0.59	-1.0
34,304	+		GFF6899	0.59	+1.8
34,304	+		GFF6899	0.59	-3.3
34,304	+		GFF6899	0.59	+0.2
34,304	+		GFF6899	0.59	-2.3
34,304	+		GFF6899	0.59	+0.2
34,304	+		GFF6899	0.59	-1.5
34,304	+		GFF6899	0.59	-3.2
34,304	+		GFF6899	0.59	-0.5
34,304	+		GFF6899	0.59	-0.7
34,304	+		GFF6899	0.59	+0.7
34,305	-		GFF6899	0.59	-0.4
34,305	-		GFF6899	0.59	-1.2
34,305	-		GFF6899	0.59	+1.3
34,305	-		GFF6899	0.59	-1.1
34,305	-		GFF6899	0.59	-1.1
34,305	-		GFF6899	0.59	+0.2
34,305	-		GFF6899	0.59	+0.8
34,305	-		GFF6899	0.59	+0.0
34,305	-		GFF6899	0.59	-2.2
34,403	+		GFF6899	0.63	-2.5
34,457	+		GFF6899	0.66	+0.3
34,457	+		GFF6899	0.66	+0.4
34,457	+		GFF6899	0.66	+0.1
34,457	+		GFF6899	0.66	-0.9
34,457	+		GFF6899	0.66	+0.7
34,457	+		GFF6899	0.66	-0.2
34,457	+		GFF6899	0.66	-0.1
34,457	+		GFF6899	0.66	+0.7
34,457	+		GFF6899	0.66	+0.3
34,457	+		GFF6899	0.66	+1.1
34,458	-		GFF6899	0.66	+1.5
34,458	-		GFF6899	0.66	-0.2
34,458	-		GFF6899	0.66	+0.7
34,458	-		GFF6899	0.66	+0.2
34,458	-		GFF6899	0.66	+3.7
34,458	-		GFF6899	0.66	-1.4
34,458	-		GFF6899	0.66	-0.4
34,458	-		GFF6899	0.66	+0.8
34,475	+		GFF6899	0.67	+0.3
34,475	+		GFF6899	0.67	+0.0
34,476	-		GFF6899	0.67	-0.4
34,476	-		GFF6899	0.67	-1.4
34,559	+		GFF6899	0.71	-0.7
34,559	+		GFF6899	0.71	-1.6
34,559	+		GFF6899	0.71	+0.8
34,559	+		GFF6899	0.71	+0.7
34,560	-		GFF6899	0.71	-0.9
34,560	-		GFF6899	0.71	-0.8
34,560	-		GFF6899	0.71	+1.3
34,560	-		GFF6899	0.71	-1.7
34,560	-		GFF6899	0.71	-0.7
34,560	-		GFF6899	0.71	+1.9
34,560	-		GFF6899	0.71	-0.8
34,560	-		GFF6899	0.71	+1.2
34,560	-		GFF6899	0.71	-3.1
34,560	-		GFF6899	0.71	-0.3
34,646	+		GFF6899	0.75	+0.3
34,647	-		GFF6899	0.75	-0.3
34,724	+		GFF6899	0.79	+2.2
34,724	+		GFF6899	0.79	-0.7
34,725	-		GFF6899	0.79	-0.5
34,725	-		GFF6899	0.79	+2.3
34,725	-		GFF6899	0.79	+0.1
34,775	+		GFF6899	0.81	-1.1
34,775	+		GFF6899	0.81	-2.5
34,775	+		GFF6899	0.81	-2.5
34,775	+		GFF6899	0.81	-1.8
34,776	-		GFF6899	0.81	-0.4
34,776	-		GFF6899	0.81	-1.6
34,776	-		GFF6899	0.81	-1.9
34,776	-		GFF6899	0.81	-1.0
34,776	-		GFF6899	0.81	+1.3
34,776	-		GFF6899	0.81	-2.2
34,796	+		GFF6899	0.82	-2.0
34,796	+		GFF6899	0.82	-1.7
34,796	+		GFF6899	0.82	+0.6
34,802	+		GFF6899	0.83	-0.4
34,802	+		GFF6899	0.83	+0.3
34,802	+		GFF6899	0.83	-0.7
34,802	+		GFF6899	0.83	-0.8
34,802	+		GFF6899	0.83	-0.8
34,803	-		GFF6899	0.83	+3.9
35,021	+				+0.5
35,022	-				-0.9
35,022	-				+0.2
35,024	+				+0.0
35,024	+				+0.3
35,024	+				+0.8
35,024	+				+1.3
35,025	-				-1.1
35,218	+				-0.7
35,218	+				+1.3
35,218	+				-0.3
35,218	+				+0.1
35,218	+				+0.3
35,218	+				+1.3
35,218	+				-1.5
35,219	-				-0.5
35,219	-				+0.9
35,219	-				+1.4
35,219	-				-0.5
35,219	-				-1.3
35,219	-				+0.3
35,219	-				-2.0
35,219	-				+0.0
35,222	-				-0.8
35,239	+				+0.8
35,239	+				-1.8
35,239	+				-3.7
35,239	+				-2.7
35,239	+				-3.2
35,239	+				-0.3
35,239	+				+0.3
35,239	+				-1.8
35,239	+				-0.5
35,239	+				+0.7
35,239	+				+0.8
35,240	-				+1.3
35,240	-				-0.5
35,240	-				+0.9
35,240	-				-3.8
35,240	-				-0.7
35,240	-				-2.6
35,240	-				-0.0
35,240	-				+0.4
35,240	-				+0.7
35,240	-				-0.5
35,240	-				+0.7
35,240	-				+1.5
35,240	-				+0.3
35,240	-				+1.1
35,240	-				-0.4
35,240	-				+0.3
35,240	-				-2.2
35,422	+		GFF6900	0.21	-1.9
35,422	+		GFF6900	0.21	-0.7
35,422	+		GFF6900	0.21	-2.1
35,422	+		GFF6900	0.21	-1.5
35,422	+		GFF6900	0.21	-0.8
35,422	+		GFF6900	0.21	-1.8
35,423	-		GFF6900	0.21	-1.6
35,423	-		GFF6900	0.21	+1.2
35,423	-		GFF6900	0.21	-2.7
35,423	-		GFF6900	0.21	-1.0
35,423	-		GFF6900	0.21	-1.3
35,423	-		GFF6900	0.21	+0.6
35,423	-		GFF6900	0.21	+0.2
35,494	+		GFF6900	0.26	-2.1
35,494	+		GFF6900	0.26	+0.7
35,494	+		GFF6900	0.26	+1.3
35,495	-		GFF6900	0.26	-1.8
35,495	-		GFF6900	0.26	+2.6
35,581	+		GFF6900	0.33	+0.3
35,581	+		GFF6900	0.33	+0.7
35,581	+		GFF6900	0.33	-1.8
35,581	+		GFF6900	0.33	+0.3
35,581	+		GFF6900	0.33	-3.6
35,582	-		GFF6900	0.33	-1.6
35,582	-		GFF6900	0.33	-1.0
35,582	-		GFF6900	0.33	+1.8
35,582	-		GFF6900	0.33	+1.6
35,582	-		GFF6900	0.33	+1.0
35,582	-		GFF6900	0.33	-2.2
36,076	+		GFF6900	0.72	-0.9
36,076	+		GFF6900	0.72	-1.3
36,076	+		GFF6900	0.72	+0.7
36,076	+		GFF6900	0.72	+0.3
36,076	+		GFF6900	0.72	+0.4
36,076	+		GFF6900	0.72	+2.3
36,076	+		GFF6900	0.72	-1.3
36,077	-		GFF6900	0.72	-1.3
36,077	-		GFF6900	0.72	-0.1
36,077	-		GFF6900	0.72	+0.1
36,077	-		GFF6900	0.72	-0.3
36,085	+		GFF6900	0.73	-1.5
36,085	+		GFF6900	0.73	-2.5
36,085	+		GFF6900	0.73	-0.7
36,085	+		GFF6900	0.73	-2.8
36,085	+		GFF6900	0.73	+0.7
36,085	+		GFF6900	0.73	-2.3
36,085	+		GFF6900	0.73	-1.7
36,085	+		GFF6900	0.73	-0.5
36,085	+		GFF6900	0.73	-0.5
36,085	+		GFF6900	0.73	-2.3
36,086	-		GFF6900	0.73	+2.2
36,086	-		GFF6900	0.73	+0.4
36,086	-		GFF6900	0.73	+1.1
36,110	-		GFF6900	0.74	+0.3
36,110	-		GFF6900	0.74	-1.8