Experiment: Community=Kojac gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6794 and GFF6795 overlap by 4 nucleotides GFF6795 and GFF6796 are separated by 19 nucleotides GFF6796 and GFF6797 are separated by 194 nucleotides GFF6797 and GFF6798 overlap by 17 nucleotides
GFF6794 - hypothetical protein, at 42,198 to 43,739
GFF6794
GFF6795 - similar to puromycin N-acetyltransferase, at 43,736 to 44,224
GFF6795
GFF6796 - Predicted kinase, at 44,244 to 44,750
GFF6796
GFF6797 - Glutamine ABC transporter, ATP-binding protein GlnQ, at 44,945 to 45,730
GFF6797
GFF6798 - ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines), at 45,714 to 46,367
GFF6798
Position (kb) 44
45 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 43.615 kb on - strand at 43.615 kb on - strand at 43.734 kb on + strand at 43.734 kb on + strand at 43.734 kb on + strand at 43.734 kb on + strand at 43.735 kb on - strand at 43.735 kb on - strand at 43.735 kb on - strand at 43.735 kb on - strand at 43.735 kb on - strand at 43.735 kb on - strand at 43.735 kb on - strand at 43.737 kb on + strand at 43.738 kb on - strand at 43.758 kb on + strand at 43.759 kb on - strand at 43.759 kb on - strand at 43.759 kb on - strand at 43.759 kb on - strand at 43.759 kb on - strand at 43.821 kb on + strand, within GFF6795 at 43.821 kb on + strand, within GFF6795 at 43.821 kb on + strand, within GFF6795 at 43.822 kb on - strand, within GFF6795 at 43.822 kb on - strand, within GFF6795 at 44.070 kb on + strand, within GFF6795 at 44.237 kb on + strand at 44.238 kb on - strand at 44.395 kb on - strand, within GFF6796 at 44.569 kb on + strand, within GFF6796 at 44.569 kb on + strand, within GFF6796 at 44.569 kb on + strand, within GFF6796 at 44.569 kb on + strand, within GFF6796 at 44.569 kb on + strand, within GFF6796 at 44.569 kb on + strand, within GFF6796 at 44.570 kb on - strand, within GFF6796 at 44.570 kb on - strand, within GFF6796 at 44.570 kb on - strand, within GFF6796 at 44.570 kb on - strand, within GFF6796 at 44.570 kb on - strand, within GFF6796 at 44.570 kb on - strand, within GFF6796 at 44.600 kb on - strand, within GFF6796 at 44.712 kb on + strand at 44.712 kb on + strand at 44.712 kb on + strand at 44.713 kb on - strand at 44.713 kb on - strand at 44.854 kb on - strand at 44.919 kb on + strand at 45.643 kb on - strand, within GFF6797 at 45.643 kb on - strand, within GFF6797
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4 remove 43,615 - +0.6 43,615 - -1.8 43,734 + -2.1 43,734 + -2.0 43,734 + -3.0 43,734 + -2.7 43,735 - -0.3 43,735 - +0.7 43,735 - -2.2 43,735 - -1.1 43,735 - +0.4 43,735 - +0.6 43,735 - -1.2 43,737 + -1.2 43,738 - -0.5 43,758 + +0.7 43,759 - +0.4 43,759 - -1.8 43,759 - +3.0 43,759 - +0.7 43,759 - -0.1 43,821 + GFF6795 0.17 -1.1 43,821 + GFF6795 0.17 -0.4 43,821 + GFF6795 0.17 +1.3 43,822 - GFF6795 0.18 -0.5 43,822 - GFF6795 0.18 -1.4 44,070 + GFF6795 0.68 +1.0 44,237 + -1.8 44,238 - +0.4 44,395 - GFF6796 0.30 -2.9 44,569 + GFF6796 0.64 -1.8 44,569 + GFF6796 0.64 +4.1 44,569 + GFF6796 0.64 +0.6 44,569 + GFF6796 0.64 -1.2 44,569 + GFF6796 0.64 -0.3 44,569 + GFF6796 0.64 -1.3 44,570 - GFF6796 0.64 +0.5 44,570 - GFF6796 0.64 -0.0 44,570 - GFF6796 0.64 -2.5 44,570 - GFF6796 0.64 -0.3 44,570 - GFF6796 0.64 +0.4 44,570 - GFF6796 0.64 +1.4 44,600 - GFF6796 0.70 +0.4 44,712 + -0.8 44,712 + -1.0 44,712 + -2.0 44,713 - -0.1 44,713 - -4.0 44,854 - +1.1 44,919 + +1.3 45,643 - GFF6797 0.89 -0.6 45,643 - GFF6797 0.89 -2.1
Or see this region's nucleotide sequence