Experiment: Community=Kojac gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6788 and GFF6789 are separated by 1 nucleotides GFF6789 and GFF6790 are separated by 77 nucleotides GFF6790 and GFF6791 are separated by 40 nucleotides GFF6791 and GFF6792 overlap by 4 nucleotides
GFF6788 - Multicopper oxidase, at 36,691 to 38,082
GFF6788
GFF6789 - Copper tolerance protein, at 38,084 to 39,556
GFF6789
GFF6790 - no description, at 39,634 to 40,065
GFF6790
GFF6791 - FIG00538730: hypothetical protein, at 40,106 to 40,393
GFF6791
GFF6792 - Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46), at 40,390 to 41,394
GFF6792
Position (kb) 38
39
40 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 37.583 kb on + strand, within GFF6788 at 37.583 kb on + strand, within GFF6788 at 37.583 kb on + strand, within GFF6788 at 37.583 kb on + strand, within GFF6788 at 37.583 kb on + strand, within GFF6788 at 37.583 kb on + strand, within GFF6788 at 37.583 kb on + strand, within GFF6788 at 37.583 kb on + strand, within GFF6788 at 37.583 kb on + strand, within GFF6788 at 37.583 kb on + strand, within GFF6788 at 37.584 kb on - strand, within GFF6788 at 37.584 kb on - strand, within GFF6788 at 37.584 kb on - strand, within GFF6788 at 37.584 kb on - strand, within GFF6788 at 37.584 kb on - strand, within GFF6788 at 37.584 kb on - strand, within GFF6788 at 37.584 kb on - strand, within GFF6788 at 37.620 kb on - strand, within GFF6788 at 37.802 kb on + strand, within GFF6788 at 37.802 kb on + strand, within GFF6788 at 37.802 kb on + strand, within GFF6788 at 37.803 kb on - strand, within GFF6788 at 37.803 kb on - strand, within GFF6788 at 37.803 kb on - strand, within GFF6788 at 37.803 kb on - strand, within GFF6788 at 37.934 kb on + strand, within GFF6788 at 37.934 kb on + strand, within GFF6788 at 37.934 kb on + strand, within GFF6788 at 37.934 kb on + strand, within GFF6788 at 37.934 kb on + strand, within GFF6788 at 37.934 kb on + strand, within GFF6788 at 37.934 kb on + strand, within GFF6788 at 37.935 kb on - strand, within GFF6788 at 37.935 kb on - strand, within GFF6788 at 37.935 kb on - strand, within GFF6788 at 37.935 kb on - strand, within GFF6788 at 38.289 kb on + strand, within GFF6789 at 38.364 kb on + strand, within GFF6789 at 38.364 kb on + strand, within GFF6789 at 38.364 kb on + strand, within GFF6789 at 38.364 kb on + strand, within GFF6789 at 38.365 kb on - strand, within GFF6789 at 38.365 kb on - strand, within GFF6789 at 38.365 kb on - strand, within GFF6789 at 38.452 kb on - strand, within GFF6789 at 38.452 kb on - strand, within GFF6789 at 38.452 kb on - strand, within GFF6789 at 38.760 kb on + strand, within GFF6789 at 38.760 kb on + strand, within GFF6789 at 38.761 kb on - strand, within GFF6789 at 38.761 kb on - strand, within GFF6789 at 38.971 kb on - strand, within GFF6789 at 39.147 kb on - strand, within GFF6789 at 39.215 kb on + strand, within GFF6789 at 39.216 kb on - strand, within GFF6789 at 39.576 kb on + strand at 39.576 kb on + strand at 39.576 kb on + strand at 39.577 kb on - strand at 39.577 kb on - strand at 39.577 kb on - strand at 39.577 kb on - strand at 39.577 kb on - strand at 39.620 kb on + strand at 39.621 kb on - strand at 39.621 kb on - strand at 39.621 kb on - strand at 40.078 kb on + strand at 40.078 kb on + strand at 40.079 kb on - strand at 40.079 kb on - strand at 40.107 kb on + strand at 40.107 kb on + strand at 40.107 kb on + strand at 40.107 kb on + strand at 40.108 kb on - strand at 40.108 kb on - strand at 40.108 kb on - strand at 40.108 kb on - strand at 40.108 kb on - strand at 40.108 kb on - strand at 40.108 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4 remove 37,583 + GFF6788 0.64 +1.9 37,583 + GFF6788 0.64 -0.4 37,583 + GFF6788 0.64 +0.6 37,583 + GFF6788 0.64 +0.7 37,583 + GFF6788 0.64 -0.8 37,583 + GFF6788 0.64 -1.6 37,583 + GFF6788 0.64 -2.5 37,583 + GFF6788 0.64 -3.2 37,583 + GFF6788 0.64 -2.5 37,583 + GFF6788 0.64 -0.6 37,584 - GFF6788 0.64 -0.3 37,584 - GFF6788 0.64 -1.0 37,584 - GFF6788 0.64 -1.3 37,584 - GFF6788 0.64 +1.4 37,584 - GFF6788 0.64 -0.6 37,584 - GFF6788 0.64 -0.8 37,584 - GFF6788 0.64 -2.0 37,620 - GFF6788 0.67 +2.0 37,802 + GFF6788 0.80 +0.4 37,802 + GFF6788 0.80 -1.5 37,802 + GFF6788 0.80 +0.2 37,803 - GFF6788 0.80 -0.4 37,803 - GFF6788 0.80 -2.0 37,803 - GFF6788 0.80 +1.7 37,803 - GFF6788 0.80 -1.3 37,934 + GFF6788 0.89 -1.2 37,934 + GFF6788 0.89 -0.6 37,934 + GFF6788 0.89 -1.1 37,934 + GFF6788 0.89 -1.2 37,934 + GFF6788 0.89 +2.4 37,934 + GFF6788 0.89 +0.3 37,934 + GFF6788 0.89 -0.0 37,935 - GFF6788 0.89 -1.4 37,935 - GFF6788 0.89 -0.2 37,935 - GFF6788 0.89 -2.0 37,935 - GFF6788 0.89 +3.4 38,289 + GFF6789 0.14 -2.1 38,364 + GFF6789 0.19 +0.4 38,364 + GFF6789 0.19 -0.0 38,364 + GFF6789 0.19 -2.3 38,364 + GFF6789 0.19 -1.1 38,365 - GFF6789 0.19 +1.8 38,365 - GFF6789 0.19 +1.2 38,365 - GFF6789 0.19 -0.0 38,452 - GFF6789 0.25 -0.1 38,452 - GFF6789 0.25 -0.3 38,452 - GFF6789 0.25 -1.0 38,760 + GFF6789 0.46 -0.1 38,760 + GFF6789 0.46 -0.3 38,761 - GFF6789 0.46 -2.1 38,761 - GFF6789 0.46 -1.5 38,971 - GFF6789 0.60 +0.5 39,147 - GFF6789 0.72 -0.9 39,215 + GFF6789 0.77 -0.1 39,216 - GFF6789 0.77 -0.0 39,576 + -0.0 39,576 + -0.4 39,576 + -1.8 39,577 - -1.2 39,577 - +0.5 39,577 - -1.6 39,577 - +0.5 39,577 - -0.5 39,620 + -2.5 39,621 - +0.6 39,621 - +1.2 39,621 - +0.4 40,078 + -0.2 40,078 + -1.0 40,079 - -1.3 40,079 - +0.1 40,107 + +0.5 40,107 + -1.6 40,107 + +1.0 40,107 + -0.0 40,108 - -0.8 40,108 - +1.2 40,108 - -0.3 40,108 - +0.7 40,108 - -0.6 40,108 - +0.7 40,108 - -1.0
Or see this region's nucleotide sequence