Strain Fitness in Variovorax sp. SCN45 around GFF6761

Experiment: Community=Kojac gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Kojac gum; Passage=4
6,375	+				-0.3
6,375	+				+0.1
6,375	+				-0.7
6,375	+				+1.2
6,375	+				-0.4
6,376	-				-2.0
6,502	+				+1.0
6,502	+				+0.3
6,502	+				-1.1
6,503	-				-1.2
6,521	+				+0.5
6,521	+				+1.2
6,521	+				+1.2
6,521	+				-0.5
6,521	+				+2.3
6,522	-				-0.3
6,522	-				+0.2
6,522	-				-0.3
6,522	-				-0.8
6,522	-				+1.4
6,522	-				-1.0
6,522	-				-0.3
6,929	+		GFF6760	0.60	-0.4
6,929	+		GFF6760	0.60	-0.3
6,930	-		GFF6760	0.60	-1.7
6,930	-		GFF6760	0.60	+0.1
6,930	-		GFF6760	0.60	-1.0
6,930	-		GFF6760	0.60	+1.4
6,930	-		GFF6760	0.60	-2.0
6,949	+		GFF6760	0.62	+1.4
6,950	-		GFF6760	0.63	-1.3
7,321	+				+0.3
7,321	+				+1.5
7,321	+				-1.0
7,321	+				-2.5
7,321	+				-0.5
7,321	+				-3.3
7,321	+				+0.5
7,321	+				-0.9
7,322	-				+1.2
7,322	-				-1.4
7,322	-				-2.7
7,345	+				-2.1
7,402	-		GFF6761	0.12	-1.8
7,730	-		GFF6761	0.31	-0.4
7,936	+		GFF6761	0.44	-1.0
7,937	-		GFF6761	0.44	-1.6
8,173	+		GFF6761	0.58	-0.6
8,173	+		GFF6761	0.58	-3.0
8,173	+		GFF6761	0.58	+3.5
8,173	+		GFF6761	0.58	+0.9
8,173	+		GFF6761	0.58	+0.8
8,173	+		GFF6761	0.58	+0.9
8,173	+		GFF6761	0.58	-1.0
8,173	+		GFF6761	0.58	-1.3
8,173	+		GFF6761	0.58	+0.8
8,173	+		GFF6761	0.58	+0.6
8,174	-		GFF6761	0.58	-0.8
8,174	-		GFF6761	0.58	+2.6
8,389	+		GFF6761	0.71	-4.0
8,389	+		GFF6761	0.71	-0.7
8,389	+		GFF6761	0.71	-1.0
8,389	+		GFF6761	0.71	+0.4
8,389	+		GFF6761	0.71	-2.0
8,389	+		GFF6761	0.71	+0.0
8,389	+		GFF6761	0.71	+2.0
8,389	+		GFF6761	0.71	-1.0
8,389	+		GFF6761	0.71	-0.2
8,389	+		GFF6761	0.71	+1.0
8,389	+		GFF6761	0.71	-1.3
8,390	-		GFF6761	0.71	-0.5
8,390	-		GFF6761	0.71	-0.0
8,390	-		GFF6761	0.71	-3.0
8,390	-		GFF6761	0.71	-2.2
8,390	-		GFF6761	0.71	-0.8
8,390	-		GFF6761	0.71	-0.6
8,390	-		GFF6761	0.71	+1.5
8,390	-		GFF6761	0.71	-0.7
8,391	-		GFF6761	0.71	-0.5
8,395	+		GFF6761	0.71	+0.6
8,395	+		GFF6761	0.71	+0.4
8,395	+		GFF6761	0.71	+0.8
8,396	-		GFF6761	0.71	-2.1
8,396	-		GFF6761	0.71	-0.6
8,401	+		GFF6761	0.71	-1.8
8,401	+		GFF6761	0.71	-1.3
8,539	+		GFF6761	0.80	-0.8
8,557	+		GFF6761	0.81	-0.7
8,557	+		GFF6761	0.81	-0.5
8,557	+		GFF6761	0.81	+0.8
8,557	+		GFF6761	0.81	-0.7
8,557	+		GFF6761	0.81	-0.5
8,557	+		GFF6761	0.81	+1.0
8,557	+		GFF6761	0.81	-1.3
8,557	+		GFF6761	0.81	-3.4
8,557	+		GFF6761	0.81	+2.8
8,557	+		GFF6761	0.81	+0.1
8,557	+		GFF6761	0.81	+0.8
8,558	-		GFF6761	0.81	+3.0
8,558	-		GFF6761	0.81	-1.3
8,558	-		GFF6761	0.81	+1.0
8,558	-		GFF6761	0.81	+1.2
8,558	-		GFF6761	0.81	-0.3
8,558	-		GFF6761	0.81	-1.0
8,558	-		GFF6761	0.81	-0.1
8,558	-		GFF6761	0.81	-0.3
8,558	-		GFF6761	0.81	+1.1
8,558	-		GFF6761	0.81	-1.3
8,558	-		GFF6761	0.81	-0.3
8,558	-		GFF6761	0.81	+3.1
8,558	-		GFF6761	0.81	+0.5
9,026	+				-2.9
9,026	+				-2.1
9,027	-				-1.6
9,075	-				+1.6
9,075	-				+0.4
9,176	+		GFF6762	0.14	+1.3
9,176	+		GFF6762	0.14	-0.6
9,176	+		GFF6762	0.14	+1.3
9,176	+		GFF6762	0.14	+0.9
9,176	+		GFF6762	0.14	-0.7
9,176	+		GFF6762	0.14	-0.1
9,177	-		GFF6762	0.14	-2.3
9,177	-		GFF6762	0.14	+2.2
9,177	-		GFF6762	0.14	-2.5
9,191	+		GFF6762	0.16	+0.4
9,191	+		GFF6762	0.16	-0.7
9,401	+		GFF6762	0.35	-0.4
9,401	+		GFF6762	0.35	-1.9
9,401	+		GFF6762	0.35	+0.6
9,401	+		GFF6762	0.35	-0.0
9,402	-		GFF6762	0.35	-0.2
9,402	-		GFF6762	0.35	+2.7
9,402	-		GFF6762	0.35	-0.6
9,402	-		GFF6762	0.35	-0.5
9,402	-		GFF6762	0.35	+0.2
9,402	-		GFF6762	0.35	+1.8
9,402	-		GFF6762	0.35	-0.3
9,402	-		GFF6762	0.35	-0.3
9,404	+		GFF6762	0.36	-2.1
9,404	+		GFF6762	0.36	+3.0
9,404	+		GFF6762	0.36	-0.6
9,404	+		GFF6762	0.36	-1.6
9,405	-		GFF6762	0.36	-2.4
9,405	-		GFF6762	0.36	-3.3
9,572	+		GFF6762	0.52	-1.0
9,572	+		GFF6762	0.52	-1.3
9,572	+		GFF6762	0.52	-1.2
9,572	+		GFF6762	0.52	+1.0
9,573	-		GFF6762	0.52	+1.0
9,573	-		GFF6762	0.52	+0.4
9,573	-		GFF6762	0.52	-1.5
9,611	+		GFF6762	0.55	-0.4
9,611	+		GFF6762	0.55	-1.6
9,611	+		GFF6762	0.55	+0.6
9,611	+		GFF6762	0.55	+0.2
9,611	+		GFF6762	0.55	+0.4
9,611	+		GFF6762	0.55	-2.5
9,611	+		GFF6762	0.55	-2.5
9,612	-		GFF6762	0.55	-3.8
9,612	-		GFF6762	0.55	-3.0
9,612	-		GFF6762	0.55	-0.4
9,612	-		GFF6762	0.55	-1.9
9,612	-		GFF6762	0.55	-0.5
9,612	-		GFF6762	0.55	-0.1
9,612	-		GFF6762	0.55	-1.3
9,612	-		GFF6762	0.55	+0.9
9,612	-		GFF6762	0.55	-1.3
9,612	-		GFF6762	0.55	-1.2
9,612	-		GFF6762	0.55	-2.9
9,636	-		GFF6762	0.58	+0.4