Strain Fitness in Variovorax sp. SCN45 around GFF6709

Experiment: Community=Kojac gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Kojac gum; Passage=4
16,165	+		GFF6708	0.38	+4.1
16,166	-		GFF6708	0.38	+0.9
16,166	-		GFF6708	0.38	-0.5
16,222	+		GFF6708	0.42	-2.1
16,222	+		GFF6708	0.42	-2.4
16,223	-		GFF6708	0.42	+1.2
16,223	-		GFF6708	0.42	+0.3
16,223	-		GFF6708	0.42	-2.3
16,223	-		GFF6708	0.42	-0.3
16,223	-		GFF6708	0.42	-0.2
16,627	+		GFF6708	0.67	-0.1
16,628	-		GFF6708	0.67	+0.5
16,628	-		GFF6708	0.67	+2.4
16,628	-		GFF6708	0.67	-1.6
16,628	-		GFF6708	0.67	-1.2
16,678	+		GFF6708	0.71	+2.0
16,718	-		GFF6708	0.73	+0.2
16,729	+		GFF6708	0.74	-1.1
16,729	+		GFF6708	0.74	-0.6
16,729	+		GFF6708	0.74	-0.9
16,730	-		GFF6708	0.74	+0.5
16,730	-		GFF6708	0.74	-2.4
16,730	-		GFF6708	0.74	+0.5
16,849	+		GFF6708	0.81	-0.7
16,849	+		GFF6708	0.81	-1.6
16,849	+		GFF6708	0.81	-1.8
17,024	-				-1.9
17,024	-				-2.9
17,038	+				+2.2
17,038	+				-2.9
17,039	-				-0.4
17,039	-				-1.7
17,039	-				-1.8
17,039	-				-1.6
17,039	-				+0.5
17,039	-				+0.1
17,039	-				+1.5
17,039	-				-2.3
17,039	-				+2.1
17,039	-				-2.5
17,039	-				-2.1
17,095	+				-3.1
17,095	+				-2.1
17,095	+				-0.7
17,095	+				-2.2
17,095	+				-0.2
17,095	+				-0.8
17,095	+				+0.7
17,095	+				+0.4
17,096	-				-2.7
17,096	-				-1.0
17,096	-				-0.0
17,096	-				+0.7
17,096	-				+0.5
17,140	+				+0.8
17,140	+				+1.5
17,141	-				-3.3
17,141	-				-2.8
17,141	-				+0.7
17,237	-				-0.2
17,268	-				+1.4
17,273	+				+0.5
17,273	+				-0.0
17,273	+				+3.0
17,274	-				+0.7
17,285	+				+0.4
17,286	-				+0.1
17,471	+		GFF6709	0.25	-0.4
17,472	-		GFF6709	0.25	-1.8
17,579	+		GFF6709	0.33	-0.5
17,580	-		GFF6709	0.33	+1.3
17,580	-		GFF6709	0.33	+1.9
17,580	-		GFF6709	0.33	+1.0
17,580	-		GFF6709	0.33	-1.9
17,624	+		GFF6709	0.37	+0.2
17,624	+		GFF6709	0.37	-2.0
17,624	+		GFF6709	0.37	+1.3
17,624	+		GFF6709	0.37	-2.2
17,625	-		GFF6709	0.37	-1.7
17,625	-		GFF6709	0.37	-0.0
17,699	+		GFF6709	0.43	+2.3
17,996	+		GFF6709	0.66	-2.5
17,996	+		GFF6709	0.66	-1.5
17,996	+		GFF6709	0.66	-1.5
17,997	-		GFF6709	0.66	-3.3
18,038	+		GFF6709	0.70	-1.2
18,113	+		GFF6709	0.76	+0.4
18,114	-		GFF6709	0.76	+4.8
18,114	-		GFF6709	0.76	-1.2
18,114	-		GFF6709	0.76	-0.7
18,255	-		GFF6709	0.87	+0.7
18,255	-		GFF6709	0.87	-1.4
18,296	+				-0.7
18,297	-				-3.0
18,297	-				+1.0
18,375	-				+1.3
18,439	+				-1.6
18,884	+		GFF6710	0.49	+1.1
18,884	+		GFF6710	0.49	-1.9
18,884	+		GFF6710	0.49	-4.0
19,063	+		GFF6710	0.68	+0.4
19,063	+		GFF6710	0.68	-0.1
19,063	+		GFF6710	0.68	+2.1
19,064	-		GFF6710	0.68	-2.2
19,307	-				-1.1
19,307	-				-0.9
19,339	+				-0.6
19,339	+				+2.4
19,339	+				-0.2
19,340	-				+1.3