Strain Fitness in Variovorax sp. SCN45 around GFF6621

Experiment: Community=Kojac gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Kojac gum; Passage=4
64,615	-		GFF6620	0.42	-1.3
64,741	+		GFF6620	0.55	-0.8
64,741	+		GFF6620	0.55	+0.5
64,957	+		GFF6620	0.78	+0.5
64,995	+		GFF6620	0.81	-0.6
64,996	-		GFF6620	0.82	-0.2
64,996	-		GFF6620	0.82	-0.3
64,996	-		GFF6620	0.82	+0.1
65,004	+		GFF6620	0.82	-0.5
65,004	+		GFF6620	0.82	+4.6
65,101	+				-0.3
65,102	-				-2.1
65,164	+				+2.0
65,164	+				+1.1
65,165	-				-1.0
65,189	+				-1.6
65,189	+				+3.4
65,190	-				-2.8
65,197	+				+0.5
65,198	-				-0.6
65,220	+				-2.6
65,221	-				-0.3
65,221	-				+2.2
65,221	-				+4.3
65,336	+				-1.4
65,337	-				-2.1
65,376	+				-0.6
65,377	-				+0.6
65,377	-				+0.0
65,377	-				-0.3
65,377	-				-1.9
65,377	-				-2.7
65,415	-				-1.8
65,493	+				+0.0
65,493	+				+0.2
65,494	-				+1.7
65,494	-				-0.6
65,494	-				-1.0
65,507	-				+0.7
65,593	+				-0.6
65,593	+				-1.2
65,593	+				+1.0
65,593	+				-3.4
65,593	+				-0.5
65,594	-				-1.4
65,594	-				-2.4
65,648	+				+0.4
65,648	+				+0.4
65,648	+				-0.7
65,648	+				-0.2
65,648	+				+1.5
65,649	-				-1.4
65,649	-				+0.0
65,649	-				-2.6
65,649	-				-1.6
65,936	+		GFF6621	0.22	+0.0
65,936	+		GFF6621	0.22	-1.4
65,937	-		GFF6621	0.22	+0.1
65,937	-		GFF6621	0.22	-1.3
65,937	-		GFF6621	0.22	-0.0
65,937	-		GFF6621	0.22	+1.0
65,985	+		GFF6621	0.25	+1.9
65,985	+		GFF6621	0.25	-0.8
65,985	+		GFF6621	0.25	-3.5
65,985	+		GFF6621	0.25	-0.8
65,986	-		GFF6621	0.25	-0.3
65,986	-		GFF6621	0.25	-0.3
65,986	-		GFF6621	0.25	-0.3
66,122	+		GFF6621	0.34	-2.6
66,122	+		GFF6621	0.34	-1.6
66,122	+		GFF6621	0.34	-0.3
66,122	+		GFF6621	0.34	-1.0
66,123	-		GFF6621	0.34	-2.3
66,123	-		GFF6621	0.34	-0.6
66,123	-		GFF6621	0.34	-2.6
66,123	-		GFF6621	0.34	-1.1
66,287	+		GFF6621	0.45	-1.4
66,287	+		GFF6621	0.45	-2.8
66,397	-		GFF6621	0.52	-1.7
66,397	-		GFF6621	0.52	-2.4
66,591	-		GFF6621	0.65	-0.3
66,621	+		GFF6621	0.67	-3.7
66,621	+		GFF6621	0.67	-1.3
66,621	+		GFF6621	0.67	-2.2
66,622	-		GFF6621	0.67	+2.1
66,622	-		GFF6621	0.67	-0.8
66,622	-		GFF6621	0.67	-1.3
66,793	-		GFF6621	0.78	-0.5
66,881	+		GFF6621	0.84	+0.1
66,882	-		GFF6621	0.84	-0.8
67,118	+				-1.7
67,119	-				+3.0
67,119	-				+1.7
67,119	-				+2.3
67,130	+				-1.0
67,130	+				-2.4
67,131	-				-0.3
67,147	-				-0.2
67,201	+				+1.5
67,201	+				-0.0
67,357	+		GFF6622	0.29	+0.1
67,357	+		GFF6622	0.29	+1.2
67,357	+		GFF6622	0.29	-2.9
67,358	-		GFF6622	0.30	-3.1
67,534	+		GFF6622	0.53	+1.6
67,534	+		GFF6622	0.53	-2.8
67,534	+		GFF6622	0.53	+1.6
67,534	+		GFF6622	0.53	+1.5
67,535	-		GFF6622	0.53	-2.4
67,535	-		GFF6622	0.53	+1.2
67,535	-		GFF6622	0.53	-0.8
67,535	-		GFF6622	0.53	-0.8
67,612	+		GFF6622	0.63	-2.6
67,612	+		GFF6622	0.63	+0.4
67,613	-		GFF6622	0.63	-1.4
67,629	-		GFF6622	0.66	-1.4
67,912	-				-1.1
67,912	-				-2.0
67,912	-				-0.8
67,937	+				+0.5
67,938	-				-1.4
67,992	+				-2.5
67,998	+				+0.2
67,998	+				-0.6
67,998	+				+0.4
67,998	+				-3.1
67,999	-				+0.0
67,999	-				-3.6
68,092	+				-2.7
68,093	-				-0.3
68,093	-				-1.1