Strain Fitness in Variovorax sp. SCN45 around GFF6502

Experiment: Community=Kojac gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6501 and GFF6502 are separated by 32 nucleotides GFF6501 - Uncharacterized MFS-type transporter, at 77,710 to 79,119 GFF6501 GFF6502 - 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27), at 79,152 to 80,150 GFF6502 Position (kb) 79 80 81Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 78.272 kb on + strand, within GFF6501at 78.272 kb on + strand, within GFF6501at 78.272 kb on + strand, within GFF6501at 78.273 kb on - strand, within GFF6501at 78.273 kb on - strand, within GFF6501at 78.273 kb on - strand, within GFF6501at 78.273 kb on - strand, within GFF6501at 78.273 kb on - strand, within GFF6501at 78.273 kb on - strand, within GFF6501at 78.273 kb on - strand, within GFF6501at 78.273 kb on - strand, within GFF6501at 78.317 kb on + strand, within GFF6501at 78.318 kb on - strand, within GFF6501at 78.318 kb on - strand, within GFF6501at 78.497 kb on + strand, within GFF6501at 78.497 kb on + strand, within GFF6501at 78.498 kb on - strand, within GFF6501at 78.498 kb on - strand, within GFF6501at 78.498 kb on - strand, within GFF6501at 78.498 kb on - strand, within GFF6501at 78.575 kb on + strand, within GFF6501at 78.575 kb on + strand, within GFF6501at 78.575 kb on + strand, within GFF6501at 78.575 kb on + strand, within GFF6501at 78.575 kb on + strand, within GFF6501at 78.575 kb on + strand, within GFF6501at 78.575 kb on + strand, within GFF6501at 78.575 kb on + strand, within GFF6501at 78.575 kb on + strand, within GFF6501at 78.575 kb on + strand, within GFF6501at 78.575 kb on + strand, within GFF6501at 78.575 kb on + strand, within GFF6501at 78.575 kb on + strand, within GFF6501at 78.576 kb on - strand, within GFF6501at 78.576 kb on - strand, within GFF6501at 78.576 kb on - strand, within GFF6501at 78.576 kb on - strand, within GFF6501at 78.576 kb on - strand, within GFF6501at 78.576 kb on - strand, within GFF6501at 78.576 kb on - strand, within GFF6501at 78.785 kb on + strand, within GFF6501at 78.785 kb on + strand, within GFF6501at 78.785 kb on + strand, within GFF6501at 78.786 kb on - strand, within GFF6501at 78.786 kb on - strand, within GFF6501at 78.786 kb on - strand, within GFF6501at 78.786 kb on - strand, within GFF6501at 78.786 kb on - strand, within GFF6501at 78.915 kb on - strand, within GFF6501at 78.926 kb on + strand, within GFF6501at 78.927 kb on - strand, within GFF6501at 79.013 kb on + strandat 79.013 kb on + strandat 79.013 kb on + strandat 79.029 kb on - strandat 79.029 kb on - strandat 79.029 kb on - strandat 79.201 kb on + strandat 79.201 kb on + strandat 79.202 kb on - strandat 79.202 kb on - strandat 79.202 kb on - strandat 79.210 kb on + strandat 79.210 kb on + strandat 79.267 kb on + strand, within GFF6502at 79.267 kb on + strand, within GFF6502at 79.267 kb on + strand, within GFF6502at 79.267 kb on + strand, within GFF6502at 79.268 kb on - strand, within GFF6502at 79.268 kb on - strand, within GFF6502at 79.271 kb on + strand, within GFF6502at 79.271 kb on + strand, within GFF6502at 79.272 kb on - strand, within GFF6502at 79.272 kb on - strand, within GFF6502at 79.280 kb on - strand, within GFF6502at 79.378 kb on + strand, within GFF6502at 79.378 kb on + strand, within GFF6502at 79.378 kb on + strand, within GFF6502at 79.378 kb on + strand, within GFF6502at 79.379 kb on - strand, within GFF6502at 79.379 kb on - strand, within GFF6502at 79.665 kb on - strand, within GFF6502at 79.768 kb on + strand, within GFF6502at 79.768 kb on + strand, within GFF6502at 79.769 kb on - strand, within GFF6502at 79.769 kb on - strand, within GFF6502at 79.769 kb on - strand, within GFF6502at 79.769 kb on - strand, within GFF6502at 80.032 kb on + strand, within GFF6502at 80.033 kb on - strand, within GFF6502at 80.073 kb on - strandat 80.073 kb on - strandat 80.089 kb on - strandat 80.089 kb on - strandat 80.089 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4
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78,272 + GFF6501 0.40 -1.7
78,272 + GFF6501 0.40 -2.2
78,272 + GFF6501 0.40 -0.4
78,273 - GFF6501 0.40 -2.8
78,273 - GFF6501 0.40 -2.1
78,273 - GFF6501 0.40 -0.0
78,273 - GFF6501 0.40 -1.4
78,273 - GFF6501 0.40 -2.3
78,273 - GFF6501 0.40 -2.6
78,273 - GFF6501 0.40 -1.6
78,273 - GFF6501 0.40 -0.2
78,317 + GFF6501 0.43 +0.4
78,318 - GFF6501 0.43 -0.4
78,318 - GFF6501 0.43 -2.7
78,497 + GFF6501 0.56 -3.2
78,497 + GFF6501 0.56 +2.2
78,498 - GFF6501 0.56 -0.4
78,498 - GFF6501 0.56 -0.8
78,498 - GFF6501 0.56 +1.8
78,498 - GFF6501 0.56 +0.2
78,575 + GFF6501 0.61 +1.0
78,575 + GFF6501 0.61 +0.3
78,575 + GFF6501 0.61 -3.3
78,575 + GFF6501 0.61 -2.3
78,575 + GFF6501 0.61 +0.3
78,575 + GFF6501 0.61 -1.7
78,575 + GFF6501 0.61 -2.0
78,575 + GFF6501 0.61 -1.7
78,575 + GFF6501 0.61 +1.2
78,575 + GFF6501 0.61 +1.5
78,575 + GFF6501 0.61 -1.2
78,575 + GFF6501 0.61 +2.3
78,575 + GFF6501 0.61 -0.7
78,576 - GFF6501 0.61 -0.7
78,576 - GFF6501 0.61 +1.3
78,576 - GFF6501 0.61 -0.7
78,576 - GFF6501 0.61 -3.3
78,576 - GFF6501 0.61 +0.2
78,576 - GFF6501 0.61 -1.3
78,576 - GFF6501 0.61 -1.1
78,785 + GFF6501 0.76 -0.1
78,785 + GFF6501 0.76 -1.7
78,785 + GFF6501 0.76 -1.6
78,786 - GFF6501 0.76 -1.8
78,786 - GFF6501 0.76 +0.4
78,786 - GFF6501 0.76 -0.4
78,786 - GFF6501 0.76 +0.3
78,786 - GFF6501 0.76 -0.8
78,915 - GFF6501 0.85 +1.4
78,926 + GFF6501 0.86 -3.8
78,927 - GFF6501 0.86 +1.1
79,013 + +0.4
79,013 + -2.9
79,013 + -1.3
79,029 - +0.6
79,029 - +2.2
79,029 - +0.0
79,201 + -0.4
79,201 + -0.3
79,202 - -3.0
79,202 - +0.9
79,202 - -2.4
79,210 + -0.9
79,210 + -0.7
79,267 + GFF6502 0.12 -2.8
79,267 + GFF6502 0.12 -0.2
79,267 + GFF6502 0.12 -4.1
79,267 + GFF6502 0.12 -1.8
79,268 - GFF6502 0.12 -1.0
79,268 - GFF6502 0.12 +1.6
79,271 + GFF6502 0.12 -1.1
79,271 + GFF6502 0.12 -1.0
79,272 - GFF6502 0.12 +0.5
79,272 - GFF6502 0.12 -0.3
79,280 - GFF6502 0.13 -2.2
79,378 + GFF6502 0.23 -2.2
79,378 + GFF6502 0.23 -3.4
79,378 + GFF6502 0.23 -0.6
79,378 + GFF6502 0.23 +0.6
79,379 - GFF6502 0.23 -0.5
79,379 - GFF6502 0.23 +1.0
79,665 - GFF6502 0.51 -1.7
79,768 + GFF6502 0.62 -0.3
79,768 + GFF6502 0.62 -0.4
79,769 - GFF6502 0.62 -2.2
79,769 - GFF6502 0.62 +0.7
79,769 - GFF6502 0.62 -0.4
79,769 - GFF6502 0.62 -3.3
80,032 + GFF6502 0.88 -0.4
80,033 - GFF6502 0.88 -2.8
80,073 - -0.1
80,073 - -1.6
80,089 - +1.9
80,089 - -0.9
80,089 - -0.7

Or see this region's nucleotide sequence