Experiment: Community=Kojac gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6489 and GFF6490 overlap by 4 nucleotides GFF6490 and GFF6491 are separated by 80 nucleotides GFF6491 and GFF6492 are separated by 22 nucleotides GFF6492 and GFF6493 are separated by 519 nucleotides
GFF6489 - no description, at 67,413 to 67,856
GFF6489
GFF6490 - Uncharacterized conserved protein YfiP, contains DTW domain, at 67,853 to 68,545
GFF6490
GFF6491 - SAM-dependent methyltransferase, at 68,626 to 69,315
GFF6491
GFF6492 - no description, at 69,338 to 69,676
GFF6492
GFF6493 - Ribosomal-protein-S5p-alanine acetyltransferase, at 70,196 to 70,549
GFF6493
Position (kb) 68
69
70 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 67.741 kb on + strand, within GFF6489 at 67.742 kb on - strand, within GFF6489 at 67.742 kb on - strand, within GFF6489 at 67.764 kb on - strand, within GFF6489 at 67.959 kb on + strand, within GFF6490 at 67.959 kb on + strand, within GFF6490 at 67.960 kb on - strand, within GFF6490 at 67.960 kb on - strand, within GFF6490 at 67.960 kb on - strand, within GFF6490 at 67.983 kb on + strand, within GFF6490 at 68.091 kb on + strand, within GFF6490 at 68.091 kb on + strand, within GFF6490 at 68.091 kb on + strand, within GFF6490 at 68.091 kb on + strand, within GFF6490 at 68.091 kb on + strand, within GFF6490 at 68.091 kb on + strand, within GFF6490 at 68.091 kb on + strand, within GFF6490 at 68.092 kb on - strand, within GFF6490 at 68.092 kb on - strand, within GFF6490 at 68.143 kb on - strand, within GFF6490 at 68.143 kb on - strand, within GFF6490 at 68.143 kb on - strand, within GFF6490 at 68.143 kb on - strand, within GFF6490 at 68.226 kb on + strand, within GFF6490 at 68.226 kb on + strand, within GFF6490 at 68.226 kb on + strand, within GFF6490 at 68.226 kb on + strand, within GFF6490 at 68.227 kb on - strand, within GFF6490 at 68.227 kb on - strand, within GFF6490 at 68.289 kb on + strand, within GFF6490 at 68.289 kb on + strand, within GFF6490 at 68.289 kb on + strand, within GFF6490 at 68.289 kb on + strand, within GFF6490 at 68.290 kb on - strand, within GFF6490 at 68.290 kb on - strand, within GFF6490 at 68.290 kb on - strand, within GFF6490 at 68.290 kb on - strand, within GFF6490 at 68.290 kb on - strand, within GFF6490 at 68.474 kb on + strand, within GFF6490 at 68.666 kb on + strand at 68.667 kb on - strand at 68.813 kb on + strand, within GFF6491 at 69.005 kb on + strand, within GFF6491 at 69.005 kb on + strand, within GFF6491 at 69.005 kb on + strand, within GFF6491 at 69.005 kb on + strand, within GFF6491 at 69.006 kb on - strand, within GFF6491 at 69.006 kb on - strand, within GFF6491 at 69.006 kb on - strand, within GFF6491 at 69.006 kb on - strand, within GFF6491 at 69.006 kb on - strand, within GFF6491 at 69.006 kb on - strand, within GFF6491 at 69.006 kb on - strand, within GFF6491 at 69.825 kb on - strand at 69.825 kb on - strand at 69.927 kb on + strand at 69.927 kb on + strand at 69.928 kb on - strand at 69.928 kb on - strand at 70.062 kb on - strand at 70.062 kb on - strand at 70.062 kb on - strand at 70.178 kb on + strand at 70.179 kb on - strand at 70.179 kb on - strand at 70.271 kb on - strand, within GFF6493 at 70.271 kb on - strand, within GFF6493 at 70.271 kb on - strand, within GFF6493 at 70.299 kb on - strand, within GFF6493 at 70.307 kb on + strand, within GFF6493 at 70.310 kb on + strand, within GFF6493 at 70.310 kb on + strand, within GFF6493 at 70.310 kb on + strand, within GFF6493 at 70.310 kb on + strand, within GFF6493 at 70.310 kb on + strand, within GFF6493 at 70.311 kb on - strand, within GFF6493 at 70.311 kb on - strand, within GFF6493
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4 remove 67,741 + GFF6489 0.74 +0.5 67,742 - GFF6489 0.74 -0.2 67,742 - GFF6489 0.74 -1.4 67,764 - GFF6489 0.79 -2.7 67,959 + GFF6490 0.15 -2.4 67,959 + GFF6490 0.15 -1.4 67,960 - GFF6490 0.15 +3.4 67,960 - GFF6490 0.15 +1.8 67,960 - GFF6490 0.15 -1.8 67,983 + GFF6490 0.19 -2.8 68,091 + GFF6490 0.34 -1.2 68,091 + GFF6490 0.34 -1.6 68,091 + GFF6490 0.34 -0.1 68,091 + GFF6490 0.34 -0.6 68,091 + GFF6490 0.34 -2.0 68,091 + GFF6490 0.34 +0.4 68,091 + GFF6490 0.34 -0.5 68,092 - GFF6490 0.34 -0.1 68,092 - GFF6490 0.34 +1.3 68,143 - GFF6490 0.42 +0.1 68,143 - GFF6490 0.42 +0.2 68,143 - GFF6490 0.42 -3.3 68,143 - GFF6490 0.42 -0.6 68,226 + GFF6490 0.54 +0.3 68,226 + GFF6490 0.54 -0.3 68,226 + GFF6490 0.54 +0.3 68,226 + GFF6490 0.54 -1.1 68,227 - GFF6490 0.54 -1.9 68,227 - GFF6490 0.54 -2.7 68,289 + GFF6490 0.63 -1.1 68,289 + GFF6490 0.63 -2.2 68,289 + GFF6490 0.63 +2.3 68,289 + GFF6490 0.63 -1.9 68,290 - GFF6490 0.63 -3.4 68,290 - GFF6490 0.63 -3.6 68,290 - GFF6490 0.63 +0.3 68,290 - GFF6490 0.63 -0.5 68,290 - GFF6490 0.63 +1.9 68,474 + GFF6490 0.90 +3.1 68,666 + -1.8 68,667 - +0.2 68,813 + GFF6491 0.27 +1.1 69,005 + GFF6491 0.55 +1.0 69,005 + GFF6491 0.55 +0.7 69,005 + GFF6491 0.55 -1.7 69,005 + GFF6491 0.55 +0.1 69,006 - GFF6491 0.55 +0.7 69,006 - GFF6491 0.55 +0.1 69,006 - GFF6491 0.55 -0.9 69,006 - GFF6491 0.55 +1.2 69,006 - GFF6491 0.55 -0.6 69,006 - GFF6491 0.55 +0.9 69,006 - GFF6491 0.55 -0.4 69,825 - -0.4 69,825 - -0.9 69,927 + +0.4 69,927 + +1.0 69,928 - +1.5 69,928 - -0.9 70,062 - +1.7 70,062 - -0.5 70,062 - +0.2 70,178 + +1.5 70,179 - +0.5 70,179 - -3.1 70,271 - GFF6493 0.21 +1.5 70,271 - GFF6493 0.21 -1.3 70,271 - GFF6493 0.21 +2.2 70,299 - GFF6493 0.29 +1.9 70,307 + GFF6493 0.31 +0.2 70,310 + GFF6493 0.32 -2.4 70,310 + GFF6493 0.32 -0.7 70,310 + GFF6493 0.32 -1.7 70,310 + GFF6493 0.32 -0.6 70,310 + GFF6493 0.32 -0.7 70,311 - GFF6493 0.32 +1.0 70,311 - GFF6493 0.32 -2.8
Or see this region's nucleotide sequence