Experiment: Community=Kojac gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6434 and GFF6435 are separated by 76 nucleotides GFF6435 and GFF6436 are separated by 34 nucleotides GFF6436 and GFF6437 are separated by 2 nucleotides
GFF6434 - Inner membrane protein YqiK, at 11,469 to 13,655
GFF6434
GFF6435 - no description, at 13,732 to 14,385
GFF6435
GFF6436 - hypothetical protein, at 14,420 to 14,794
GFF6436
GFF6437 - no description, at 14,797 to 15,510
GFF6437
Position (kb) 13
14
15 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 13.150 kb on + strand, within GFF6434 at 13.150 kb on + strand, within GFF6434 at 13.150 kb on + strand, within GFF6434 at 13.151 kb on - strand, within GFF6434 at 13.213 kb on + strand, within GFF6434 at 13.213 kb on + strand, within GFF6434 at 13.495 kb on + strand at 13.495 kb on + strand at 13.496 kb on - strand at 13.766 kb on + strand at 13.787 kb on + strand at 14.192 kb on + strand, within GFF6435 at 14.192 kb on + strand, within GFF6435 at 14.192 kb on + strand, within GFF6435 at 14.192 kb on + strand, within GFF6435 at 14.192 kb on + strand, within GFF6435 at 14.192 kb on + strand, within GFF6435 at 14.192 kb on + strand, within GFF6435 at 14.193 kb on - strand, within GFF6435 at 14.193 kb on - strand, within GFF6435 at 14.193 kb on - strand, within GFF6435 at 14.193 kb on - strand, within GFF6435 at 14.193 kb on - strand, within GFF6435 at 14.310 kb on - strand, within GFF6435 at 14.339 kb on + strand at 14.421 kb on + strand at 14.421 kb on + strand at 14.421 kb on + strand at 14.422 kb on - strand at 14.422 kb on - strand at 14.577 kb on + strand, within GFF6436 at 14.798 kb on + strand at 14.798 kb on + strand at 14.798 kb on + strand at 14.798 kb on + strand at 14.798 kb on + strand at 14.798 kb on + strand at 14.799 kb on - strand at 15.173 kb on + strand, within GFF6437 at 15.174 kb on - strand, within GFF6437 at 15.293 kb on + strand, within GFF6437 at 15.293 kb on + strand, within GFF6437 at 15.293 kb on + strand, within GFF6437 at 15.294 kb on - strand, within GFF6437 at 15.294 kb on - strand, within GFF6437
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4 remove 13,150 + GFF6434 0.77 -1.1 13,150 + GFF6434 0.77 +0.3 13,150 + GFF6434 0.77 -0.2 13,151 - GFF6434 0.77 -0.7 13,213 + GFF6434 0.80 -0.8 13,213 + GFF6434 0.80 -3.0 13,495 + -1.4 13,495 + -4.1 13,496 - -1.4 13,766 + +0.8 13,787 + -1.1 14,192 + GFF6435 0.70 +1.0 14,192 + GFF6435 0.70 -2.2 14,192 + GFF6435 0.70 -1.1 14,192 + GFF6435 0.70 +0.6 14,192 + GFF6435 0.70 +2.2 14,192 + GFF6435 0.70 +2.0 14,192 + GFF6435 0.70 -0.4 14,193 - GFF6435 0.70 -1.7 14,193 - GFF6435 0.70 +0.2 14,193 - GFF6435 0.70 -0.4 14,193 - GFF6435 0.70 +0.9 14,193 - GFF6435 0.70 -1.7 14,310 - GFF6435 0.88 -0.5 14,339 + +0.3 14,421 + +2.9 14,421 + +0.3 14,421 + +3.1 14,422 - +1.5 14,422 - +0.5 14,577 + GFF6436 0.42 -1.6 14,798 + -0.4 14,798 + -2.5 14,798 + -3.1 14,798 + -0.0 14,798 + -3.2 14,798 + +2.6 14,799 - -1.8 15,173 + GFF6437 0.53 -1.4 15,174 - GFF6437 0.53 -0.4 15,293 + GFF6437 0.69 -1.8 15,293 + GFF6437 0.69 -0.4 15,293 + GFF6437 0.69 -0.1 15,294 - GFF6437 0.70 -0.5 15,294 - GFF6437 0.70 -2.7
Or see this region's nucleotide sequence