Strain Fitness in Variovorax sp. SCN45 around GFF6339

Experiment: Community=Kojac gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Kojac gum; Passage=4
2,467	-		GFF6337	0.50	-1.3
2,688	+		GFF6337	0.76	-1.0
2,689	-		GFF6337	0.76	-0.4
2,689	-		GFF6337	0.76	+0.7
2,814	+				-1.9
2,814	+				-3.1
2,983	+		GFF6338	0.77	+1.2
2,983	+		GFF6338	0.77	-0.5
2,983	+		GFF6338	0.77	-0.9
2,983	+		GFF6338	0.77	-0.7
2,984	-		GFF6338	0.78	+0.8
2,984	-		GFF6338	0.78	-1.6
2,984	-		GFF6338	0.78	-0.1
3,006	+				+0.4
3,162	-				-1.6
3,162	-				+0.5
3,162	-				-0.1
3,359	+				+1.8
3,360	-				-0.3
3,385	+				-3.3
3,396	+				-2.0
3,397	-				-0.5
3,399	+				-1.0
3,399	+				+1.3
3,568	+				+0.5
3,568	+				+0.7
3,568	+				+2.2
3,569	-				+0.4
3,569	-				-0.6
3,569	-				-1.2
3,569	-				+1.5
3,569	-				+0.5
3,569	-				-0.1
3,635	-				+0.9
3,635	-				-0.1
3,635	-				-0.6
3,635	-				+0.1
3,635	-				-2.0
3,635	-				-2.5
3,639	+				-0.7
3,639	+				-2.6
3,640	-				+1.2
3,686	-				-3.5
3,737	+				+0.5
3,737	+				-0.7
3,738	-				+1.0
3,774	-				+0.5
3,780	-				-1.3
3,797	+				+0.4
3,797	+				-1.7
3,798	-				-1.8
3,896	-		GFF6340	0.58	-2.9
3,896	-		GFF6340	0.58	+0.2
4,069	+				-0.5
4,069	+				-1.5
4,070	-				+0.2
4,070	-				+1.9
4,116	-				-0.8
4,123	-				-2.4
4,200	+				-1.1
4,200	+				-0.2
4,201	-				-1.4
4,201	-				-0.2
4,201	-				-0.1
4,201	-				+1.0
4,201	-				-0.7
4,209	+				+0.0
4,253	+				-1.7
4,271	+				-0.7
4,272	-				-1.8
4,272	-				+0.9
4,390	+				+0.3
4,390	+				-1.7
4,391	-				+3.4
4,391	-				-3.6
4,439	-				-1.1