Strain Fitness in Variovorax sp. SCN45 around GFF6322

Experiment: Community=Kojac gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Kojac gum; Passage=4
112,107	+		GFF6321	0.56	-0.2
112,107	+		GFF6321	0.56	+1.1
112,107	+		GFF6321	0.56	-1.3
112,107	+		GFF6321	0.56	+0.8
112,107	+		GFF6321	0.56	+1.5
112,107	+		GFF6321	0.56	+0.2
112,107	+		GFF6321	0.56	+1.4
112,107	+		GFF6321	0.56	-1.8
112,107	+		GFF6321	0.56	+0.2
112,107	+		GFF6321	0.56	-1.9
112,107	+		GFF6321	0.56	-2.4
112,108	-		GFF6321	0.56	+2.7
112,108	-		GFF6321	0.56	-1.8
112,108	-		GFF6321	0.56	+0.8
112,108	-		GFF6321	0.56	-1.0
112,108	-		GFF6321	0.56	+0.2
112,108	-		GFF6321	0.56	+1.5
112,108	-		GFF6321	0.56	-1.0
112,108	-		GFF6321	0.56	-0.8
112,108	-		GFF6321	0.56	+0.2
112,108	-		GFF6321	0.56	-0.7
112,108	-		GFF6321	0.56	-0.5
112,116	+		GFF6321	0.57	+2.5
112,117	-		GFF6321	0.57	-1.1
112,293	+		GFF6321	0.65	-2.7
112,293	+		GFF6321	0.65	+1.2
112,293	+		GFF6321	0.65	-2.1
112,293	+		GFF6321	0.65	-2.0
112,293	+		GFF6321	0.65	+1.0
112,293	+		GFF6321	0.65	+0.5
112,293	+		GFF6321	0.65	-0.8
112,293	+		GFF6321	0.65	+0.9
112,293	+		GFF6321	0.65	-1.5
112,294	-		GFF6321	0.65	-1.7
112,294	-		GFF6321	0.65	-1.0
112,294	-		GFF6321	0.65	+1.2
112,294	-		GFF6321	0.65	-0.3
112,294	-		GFF6321	0.65	-0.9
112,294	-		GFF6321	0.65	-2.5
112,294	-		GFF6321	0.65	+1.2
112,294	-		GFF6321	0.65	-1.0
112,294	-		GFF6321	0.65	-0.7
112,294	-		GFF6321	0.65	-2.8
112,294	-		GFF6321	0.65	+1.9
112,294	-		GFF6321	0.65	+0.0
112,294	-		GFF6321	0.65	-2.0
112,294	-		GFF6321	0.65	+0.5
112,294	-		GFF6321	0.65	+0.6
112,299	+		GFF6321	0.65	+2.6
112,299	+		GFF6321	0.65	-0.4
112,299	+		GFF6321	0.65	-0.8
112,299	+		GFF6321	0.65	-0.5
112,300	-		GFF6321	0.65	-1.0
112,300	-		GFF6321	0.65	-1.8
112,300	-		GFF6321	0.65	+2.1
112,300	-		GFF6321	0.65	-0.2
112,300	-		GFF6321	0.65	-0.1
112,323	+		GFF6321	0.66	-0.5
112,323	+		GFF6321	0.66	-1.2
112,323	+		GFF6321	0.66	+0.5
112,323	+		GFF6321	0.66	-0.1
112,323	+		GFF6321	0.66	+1.1
112,323	+		GFF6321	0.66	+1.5
112,323	+		GFF6321	0.66	-2.1
112,323	+		GFF6321	0.66	+1.8
112,324	-		GFF6321	0.66	+0.9
112,324	-		GFF6321	0.66	-2.7
112,324	-		GFF6321	0.66	-1.5
112,324	-		GFF6321	0.66	-1.2
112,326	+		GFF6321	0.66	+0.5
112,326	+		GFF6321	0.66	-0.9
112,326	+		GFF6321	0.66	-0.5
112,326	+		GFF6321	0.66	+1.4
112,326	+		GFF6321	0.66	-0.1
112,326	+		GFF6321	0.66	+0.2
112,326	+		GFF6321	0.66	+0.5
112,326	+		GFF6321	0.66	-0.7
112,326	+		GFF6321	0.66	+1.2
112,326	+		GFF6321	0.66	-0.9
112,327	-		GFF6321	0.66	-0.7
112,327	-		GFF6321	0.66	+1.3
112,327	-		GFF6321	0.66	-0.6
112,327	-		GFF6321	0.66	-1.9
112,327	-		GFF6321	0.66	-1.2
112,327	-		GFF6321	0.66	-0.4
112,327	-		GFF6321	0.66	-1.0
112,327	-		GFF6321	0.66	+1.0
112,392	+		GFF6321	0.69	+0.0
112,392	+		GFF6321	0.69	-1.1
112,392	+		GFF6321	0.69	+1.2
112,392	+		GFF6321	0.69	-1.0
112,401	+		GFF6321	0.69	-1.9
112,401	+		GFF6321	0.69	-0.3
112,401	+		GFF6321	0.69	-0.4
112,401	+		GFF6321	0.69	-0.3
112,401	+		GFF6321	0.69	+1.1
112,401	+		GFF6321	0.69	+0.2
112,401	+		GFF6321	0.69	-0.1
112,401	+		GFF6321	0.69	+2.4
112,401	+		GFF6321	0.69	-1.6
112,401	+		GFF6321	0.69	+0.1
112,402	-		GFF6321	0.69	-3.5
112,402	-		GFF6321	0.69	-2.9
112,402	-		GFF6321	0.69	-0.3
112,402	-		GFF6321	0.69	+3.3
112,402	-		GFF6321	0.69	-1.0
112,402	-		GFF6321	0.69	+0.7
112,488	+		GFF6321	0.73	-3.0
112,488	+		GFF6321	0.73	-1.7
112,489	-		GFF6321	0.73	+0.1
112,521	+		GFF6321	0.75	+0.5
112,521	+		GFF6321	0.75	+2.9
112,521	+		GFF6321	0.75	-0.7
112,521	+		GFF6321	0.75	-0.6
112,521	+		GFF6321	0.75	-0.5
112,522	-		GFF6321	0.75	+1.0
112,522	-		GFF6321	0.75	-0.8
112,578	+		GFF6321	0.77	-0.0
112,578	+		GFF6321	0.77	-2.0
112,578	+		GFF6321	0.77	-1.6
112,578	+		GFF6321	0.77	-3.1
112,578	+		GFF6321	0.77	-0.1
112,578	+		GFF6321	0.77	-0.7
112,578	+		GFF6321	0.77	-1.5
112,578	+		GFF6321	0.77	+0.5
112,578	+		GFF6321	0.77	-0.3
112,578	+		GFF6321	0.77	-1.2
112,578	+		GFF6321	0.77	+0.5
112,578	+		GFF6321	0.77	+1.3
112,578	+		GFF6321	0.77	-0.2
112,578	+		GFF6321	0.77	+0.2
112,578	+		GFF6321	0.77	-1.1
112,578	+		GFF6321	0.77	+1.6
112,578	+		GFF6321	0.77	+1.9
112,578	+		GFF6321	0.77	-2.4
112,579	-		GFF6321	0.77	-3.0
112,579	-		GFF6321	0.77	-2.0
112,579	-		GFF6321	0.77	-1.5
112,579	-		GFF6321	0.77	+3.3
112,579	-		GFF6321	0.77	+0.9
112,579	-		GFF6321	0.77	-0.5
112,579	-		GFF6321	0.77	-0.4
112,579	-		GFF6321	0.77	-0.5
112,579	-		GFF6321	0.77	-0.8
112,579	-		GFF6321	0.77	-1.8
112,579	-		GFF6321	0.77	-2.5
112,579	-		GFF6321	0.77	-0.1
112,579	-		GFF6321	0.77	-0.8
112,579	-		GFF6321	0.77	+0.4
112,579	-		GFF6321	0.77	-1.5
112,581	+		GFF6321	0.78	+1.7
112,581	+		GFF6321	0.78	+1.3
112,581	+		GFF6321	0.78	-3.0
112,581	+		GFF6321	0.78	-0.7
112,581	+		GFF6321	0.78	-1.2
112,581	+		GFF6321	0.78	-2.2
112,581	+		GFF6321	0.78	-0.7
112,581	+		GFF6321	0.78	-0.1
112,582	-		GFF6321	0.78	+0.8
112,582	-		GFF6321	0.78	-0.1
112,582	-		GFF6321	0.78	+0.4
112,582	-		GFF6321	0.78	-2.1
112,582	-		GFF6321	0.78	-1.5
112,582	-		GFF6321	0.78	-0.7
112,582	-		GFF6321	0.78	+0.0
112,582	-		GFF6321	0.78	+0.8
112,582	-		GFF6321	0.78	+1.2
112,582	-		GFF6321	0.78	+1.5
112,582	-		GFF6321	0.78	+1.6
112,582	-		GFF6321	0.78	+0.1
112,582	-		GFF6321	0.78	-0.6
112,582	-		GFF6321	0.78	+2.8
112,582	-		GFF6321	0.78	-1.8
112,584	+		GFF6321	0.78	-2.9
112,584	+		GFF6321	0.78	-0.4
112,584	+		GFF6321	0.78	-1.8
112,584	+		GFF6321	0.78	-1.5
112,584	+		GFF6321	0.78	+1.0
112,584	+		GFF6321	0.78	+0.3
112,585	-		GFF6321	0.78	-1.3
112,585	-		GFF6321	0.78	-1.5
112,585	-		GFF6321	0.78	+0.7
112,585	-		GFF6321	0.78	-0.3
112,599	+		GFF6321	0.78	-1.3
112,599	+		GFF6321	0.78	+0.8
112,599	+		GFF6321	0.78	+1.4
112,599	+		GFF6321	0.78	+2.6
112,599	+		GFF6321	0.78	-0.3
112,599	+		GFF6321	0.78	+0.2
112,600	-		GFF6321	0.78	+1.8
112,600	-		GFF6321	0.78	-0.4
112,600	-		GFF6321	0.78	-1.3
112,600	-		GFF6321	0.78	-0.1
112,600	-		GFF6321	0.78	+1.2
112,600	-		GFF6321	0.78	-1.5
112,600	-		GFF6321	0.78	-2.3
112,600	-		GFF6321	0.78	-1.2
112,600	-		GFF6321	0.78	+1.0
112,600	-		GFF6321	0.78	+1.3
112,609	-		GFF6321	0.79	-1.7
112,609	-		GFF6321	0.79	-0.6
112,836	+		GFF6321	0.89	-0.1
112,836	+		GFF6321	0.89	-0.5
112,836	+		GFF6321	0.89	-0.7
112,836	+		GFF6321	0.89	+1.1
112,836	+		GFF6321	0.89	-0.6
112,836	+		GFF6321	0.89	+0.3
112,836	+		GFF6321	0.89	+1.5
112,836	+		GFF6321	0.89	+2.0
112,836	+		GFF6321	0.89	+0.2
112,836	+		GFF6321	0.89	-0.5
112,836	+		GFF6321	0.89	+0.9
112,836	+		GFF6321	0.89	+0.1
112,836	+		GFF6321	0.89	+0.3
112,836	+		GFF6321	0.89	+2.5
112,837	-		GFF6321	0.89	-1.8
112,837	-		GFF6321	0.89	+0.5
112,837	-		GFF6321	0.89	+0.2
112,837	-		GFF6321	0.89	+0.9
112,837	-		GFF6321	0.89	-1.5
112,837	-		GFF6321	0.89	+0.1
112,837	-		GFF6321	0.89	+0.4
112,837	-		GFF6321	0.89	+1.6
112,851	+		GFF6321	0.90	-0.5
112,851	+		GFF6321	0.90	-3.4
112,851	+		GFF6321	0.90	+1.0
112,851	+		GFF6321	0.90	+0.2
112,851	+		GFF6321	0.90	+0.8
112,852	-		GFF6321	0.90	-2.0
112,852	-		GFF6321	0.90	+1.1
112,852	-		GFF6321	0.90	-1.3
112,852	-		GFF6321	0.90	+0.1
112,852	-		GFF6321	0.90	-2.1
112,852	-		GFF6321	0.90	-1.0
112,852	-		GFF6321	0.90	+1.8
112,914	+				+0.5
112,915	-				-3.7
112,915	-				+0.9
112,986	+				-2.4
112,986	+				-0.4
112,986	+				+0.0
112,987	-				+0.0
112,987	-				-0.8
112,987	-				+0.4
112,987	-				+0.2
112,987	-				-0.5
113,022	+				+0.4
113,022	+				-3.2
113,022	+				+0.9
113,022	+				-2.1
113,022	+				-0.2
113,022	+				-2.3
113,022	+				-0.3
113,022	+				+0.5
113,022	+				-0.3
113,022	+				-1.8
113,022	+				+2.4
113,023	-				+0.5
113,023	-				-0.4
113,023	-				+0.8
113,023	-				+2.8
113,023	-				-2.2
113,023	-				+0.5
113,023	-				-1.3
113,023	-				-3.0
113,023	-				-0.7
113,023	-				-0.1
113,023	-				-2.4
113,023	-				-0.1
113,023	-				-0.0
113,759	+		GFF6322	0.69	-0.1
113,759	+		GFF6322	0.69	-1.1
113,759	+		GFF6322	0.69	-2.9
113,759	+		GFF6322	0.69	-1.3
113,759	+		GFF6322	0.69	+0.3
113,759	+		GFF6322	0.69	-2.3
113,759	+		GFF6322	0.69	+0.5
113,759	+		GFF6322	0.69	-1.5
113,760	-		GFF6322	0.70	-4.7
113,760	-		GFF6322	0.70	+0.2
113,760	-		GFF6322	0.70	-2.6
113,760	-		GFF6322	0.70	-1.6
113,760	-		GFF6322	0.70	-0.0
113,760	-		GFF6322	0.70	-1.6
113,760	-		GFF6322	0.70	-1.5
113,760	-		GFF6322	0.70	-1.4
113,760	-		GFF6322	0.70	-2.1
113,760	-		GFF6322	0.70	-3.0
113,760	-		GFF6322	0.70	+0.5
113,760	-		GFF6322	0.70	-3.1
113,760	-		GFF6322	0.70	-1.0
113,760	-		GFF6322	0.70	-2.5
113,765	+		GFF6322	0.70	-0.7
113,765	+		GFF6322	0.70	-0.7
113,765	+		GFF6322	0.70	-4.2
113,765	+		GFF6322	0.70	-2.1
113,765	+		GFF6322	0.70	-2.6
113,765	+		GFF6322	0.70	-1.3
113,765	+		GFF6322	0.70	-1.4
113,765	+		GFF6322	0.70	-1.6
113,765	+		GFF6322	0.70	-3.1
113,765	+		GFF6322	0.70	-0.3
113,765	+		GFF6322	0.70	-3.6
113,765	+		GFF6322	0.70	-1.9
113,765	+		GFF6322	0.70	-1.8
113,765	+		GFF6322	0.70	-2.1
113,765	+		GFF6322	0.70	-2.1
113,765	+		GFF6322	0.70	-2.3
113,765	+		GFF6322	0.70	-2.5
113,765	+		GFF6322	0.70	-0.5
113,765	+		GFF6322	0.70	-3.3
113,765	+		GFF6322	0.70	-3.5
113,765	+		GFF6322	0.70	-1.9
113,766	-		GFF6322	0.70	-2.3
113,766	-		GFF6322	0.70	-4.5
113,766	-		GFF6322	0.70	-1.2
113,766	-		GFF6322	0.70	-2.7
113,766	-		GFF6322	0.70	-0.5
113,766	-		GFF6322	0.70	-1.1
113,766	-		GFF6322	0.70	-3.0
113,766	-		GFF6322	0.70	-2.9
113,766	-		GFF6322	0.70	+0.5
113,766	-		GFF6322	0.70	-2.4
113,766	-		GFF6322	0.70	-1.4
113,766	-		GFF6322	0.70	+0.2
113,766	-		GFF6322	0.70	-2.4
113,766	-		GFF6322	0.70	-1.2
113,766	-		GFF6322	0.70	-1.6
113,849	+		GFF6322	0.79	-2.7
114,002	+				-0.1
114,002	+				-2.4
114,002	+				-1.4
114,002	+				-2.4
114,002	+				+1.7
114,002	+				-1.1
114,002	+				-2.0
114,002	+				-3.6
114,002	+				-1.3
114,002	+				-2.6
114,003	-				+0.5
114,003	-				-0.3
114,003	-				-1.5
114,003	-				-0.7
114,003	-				-2.1
114,003	-				+0.2
114,003	-				-3.6
114,003	-				-2.2
114,430	+		GFF6323	0.30	+2.1
114,430	+		GFF6323	0.30	+1.1
114,430	+		GFF6323	0.30	+0.2
114,430	+		GFF6323	0.30	-0.8
114,430	+		GFF6323	0.30	+1.3
114,430	+		GFF6323	0.30	+0.6
114,430	+		GFF6323	0.30	+2.1
114,430	+		GFF6323	0.30	-1.2
114,430	+		GFF6323	0.30	-1.5
114,431	-		GFF6323	0.30	+0.0
114,431	-		GFF6323	0.30	-0.8
114,431	-		GFF6323	0.30	-1.8
114,431	-		GFF6323	0.30	-2.9
114,431	-		GFF6323	0.30	+1.3
114,431	-		GFF6323	0.30	+1.5
114,431	-		GFF6323	0.30	+2.5
114,431	-		GFF6323	0.30	-1.1
114,460	+		GFF6323	0.32	-1.8
114,610	+		GFF6323	0.44	-1.2
114,663	+		GFF6323	0.48	-2.1
114,664	-		GFF6323	0.48	-1.9
114,664	-		GFF6323	0.48	-0.7
114,787	+		GFF6323	0.58	-1.5
114,787	+		GFF6323	0.58	-2.3
114,788	-		GFF6323	0.58	-0.4
114,788	-		GFF6323	0.58	+0.6
114,788	-		GFF6323	0.58	-2.1
114,788	-		GFF6323	0.58	+0.7
114,788	-		GFF6323	0.58	+2.2
114,823	+		GFF6323	0.60	+1.9
114,823	+		GFF6323	0.60	+0.4
114,823	+		GFF6323	0.60	-1.8
114,823	+		GFF6323	0.60	-2.8
114,824	-		GFF6323	0.60	-0.5
114,853	+		GFF6323	0.63	+2.0
114,853	+		GFF6323	0.63	-1.6
114,853	+		GFF6323	0.63	-1.5
114,853	+		GFF6323	0.63	-3.2
114,853	+		GFF6323	0.63	+3.5
114,853	+		GFF6323	0.63	+1.1
114,853	+		GFF6323	0.63	+0.5
114,853	+		GFF6323	0.63	-0.3
114,853	+		GFF6323	0.63	-0.0
114,853	+		GFF6323	0.63	-1.3
114,853	+		GFF6323	0.63	-0.5
114,853	+		GFF6323	0.63	+0.5
114,854	-		GFF6323	0.63	-1.1
114,854	-		GFF6323	0.63	-2.5
114,854	-		GFF6323	0.63	+0.9
114,854	-		GFF6323	0.63	-1.4
114,854	-		GFF6323	0.63	+0.7
114,854	-		GFF6323	0.63	+0.6
114,854	-		GFF6323	0.63	-0.7
114,854	-		GFF6323	0.63	-1.4
114,854	-		GFF6323	0.63	+2.5