Experiment: Community=Kojac gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6276 and GFF6277 are separated by 46 nucleotides GFF6277 and GFF6278 are separated by 22 nucleotides
GFF6276 - Uncharacterized MFS-type transporter, at 65,785 to 66,972
GFF6276
GFF6277 - YecA-like protein, at 67,019 to 67,804
GFF6277
GFF6278 - Ferredoxin-dependent glutamate synthase (EC 1.4.7.1), at 67,827 to 69,557
GFF6278
Position (kb) 67
68 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 66.029 kb on + strand, within GFF6276 at 66.029 kb on + strand, within GFF6276 at 66.030 kb on - strand, within GFF6276 at 66.030 kb on - strand, within GFF6276 at 66.131 kb on + strand, within GFF6276 at 66.131 kb on + strand, within GFF6276 at 66.132 kb on - strand, within GFF6276 at 66.132 kb on - strand, within GFF6276 at 66.132 kb on - strand, within GFF6276 at 66.263 kb on + strand, within GFF6276 at 66.263 kb on + strand, within GFF6276 at 66.264 kb on - strand, within GFF6276 at 66.264 kb on - strand, within GFF6276 at 66.326 kb on + strand, within GFF6276 at 66.326 kb on + strand, within GFF6276 at 66.326 kb on + strand, within GFF6276 at 66.326 kb on + strand, within GFF6276 at 66.326 kb on + strand, within GFF6276 at 66.326 kb on + strand, within GFF6276 at 66.326 kb on + strand, within GFF6276 at 66.326 kb on + strand, within GFF6276 at 66.326 kb on + strand, within GFF6276 at 66.326 kb on + strand, within GFF6276 at 66.326 kb on + strand, within GFF6276 at 66.327 kb on - strand, within GFF6276 at 66.327 kb on - strand, within GFF6276 at 66.327 kb on - strand, within GFF6276 at 66.327 kb on - strand, within GFF6276 at 66.330 kb on + strand, within GFF6276 at 66.330 kb on + strand, within GFF6276 at 66.330 kb on + strand, within GFF6276 at 66.331 kb on - strand, within GFF6276 at 66.455 kb on + strand, within GFF6276 at 66.455 kb on + strand, within GFF6276 at 66.456 kb on - strand, within GFF6276 at 66.456 kb on - strand, within GFF6276 at 66.521 kb on + strand, within GFF6276 at 66.521 kb on + strand, within GFF6276 at 66.521 kb on + strand, within GFF6276 at 66.521 kb on + strand, within GFF6276 at 66.521 kb on + strand, within GFF6276 at 66.521 kb on + strand, within GFF6276 at 66.521 kb on + strand, within GFF6276 at 66.521 kb on + strand, within GFF6276 at 66.522 kb on - strand, within GFF6276 at 66.522 kb on - strand, within GFF6276 at 66.522 kb on - strand, within GFF6276 at 66.522 kb on - strand, within GFF6276 at 66.522 kb on - strand, within GFF6276 at 66.522 kb on - strand, within GFF6276 at 66.522 kb on - strand, within GFF6276 at 66.522 kb on - strand, within GFF6276 at 66.522 kb on - strand, within GFF6276 at 66.522 kb on - strand, within GFF6276 at 66.522 kb on - strand, within GFF6276 at 66.522 kb on - strand, within GFF6276 at 66.522 kb on - strand, within GFF6276 at 66.522 kb on - strand, within GFF6276 at 66.522 kb on - strand, within GFF6276 at 66.710 kb on + strand, within GFF6276 at 66.710 kb on + strand, within GFF6276 at 66.710 kb on + strand, within GFF6276 at 66.710 kb on + strand, within GFF6276 at 66.710 kb on + strand, within GFF6276 at 66.710 kb on + strand, within GFF6276 at 66.710 kb on + strand, within GFF6276 at 66.710 kb on + strand, within GFF6276 at 66.711 kb on - strand, within GFF6276 at 66.711 kb on - strand, within GFF6276 at 66.711 kb on - strand, within GFF6276 at 66.711 kb on - strand, within GFF6276 at 66.711 kb on - strand, within GFF6276 at 66.711 kb on - strand, within GFF6276 at 67.044 kb on + strand at 67.045 kb on - strand at 67.152 kb on + strand, within GFF6277 at 67.152 kb on + strand, within GFF6277 at 67.153 kb on - strand, within GFF6277 at 67.153 kb on - strand, within GFF6277 at 67.153 kb on - strand, within GFF6277 at 67.153 kb on - strand, within GFF6277 at 67.153 kb on - strand, within GFF6277 at 67.153 kb on - strand, within GFF6277 at 67.224 kb on + strand, within GFF6277 at 67.224 kb on + strand, within GFF6277 at 67.224 kb on + strand, within GFF6277 at 67.224 kb on + strand, within GFF6277 at 67.224 kb on + strand, within GFF6277 at 67.224 kb on + strand, within GFF6277 at 67.224 kb on + strand, within GFF6277 at 67.225 kb on - strand, within GFF6277 at 67.225 kb on - strand, within GFF6277 at 67.225 kb on - strand, within GFF6277 at 67.225 kb on - strand, within GFF6277 at 67.356 kb on + strand, within GFF6277 at 67.356 kb on + strand, within GFF6277 at 67.356 kb on + strand, within GFF6277 at 67.356 kb on + strand, within GFF6277 at 67.356 kb on + strand, within GFF6277 at 67.356 kb on + strand, within GFF6277 at 67.356 kb on + strand, within GFF6277 at 67.356 kb on + strand, within GFF6277 at 67.356 kb on + strand, within GFF6277 at 67.357 kb on - strand, within GFF6277 at 67.357 kb on - strand, within GFF6277 at 67.357 kb on - strand, within GFF6277 at 67.357 kb on - strand, within GFF6277 at 67.357 kb on - strand, within GFF6277 at 67.357 kb on - strand, within GFF6277 at 67.357 kb on - strand, within GFF6277 at 67.357 kb on - strand, within GFF6277 at 67.357 kb on - strand, within GFF6277 at 67.357 kb on - strand, within GFF6277 at 67.357 kb on - strand, within GFF6277 at 67.357 kb on - strand, within GFF6277 at 67.611 kb on + strand, within GFF6277 at 67.826 kb on + strand at 67.826 kb on + strand at 67.826 kb on + strand at 67.826 kb on + strand at 67.826 kb on + strand at 67.826 kb on + strand at 67.826 kb on + strand at 67.826 kb on + strand at 67.826 kb on + strand at 67.826 kb on + strand at 67.826 kb on + strand at 67.826 kb on + strand at 67.826 kb on + strand at 67.826 kb on + strand at 67.826 kb on + strand at 67.827 kb on - strand at 67.827 kb on - strand at 67.827 kb on - strand at 67.827 kb on - strand at 67.827 kb on - strand at 67.827 kb on - strand at 67.827 kb on - strand at 67.827 kb on - strand at 67.827 kb on - strand at 67.827 kb on - strand at 67.827 kb on - strand at 67.827 kb on - strand at 67.827 kb on - strand at 67.827 kb on - strand at 67.827 kb on - strand at 67.827 kb on - strand at 67.853 kb on + strand at 67.853 kb on + strand at 67.853 kb on + strand at 67.853 kb on + strand at 67.853 kb on + strand at 67.853 kb on + strand at 67.854 kb on - strand at 67.854 kb on - strand at 67.854 kb on - strand at 67.854 kb on - strand at 67.854 kb on - strand at 67.859 kb on + strand at 67.859 kb on + strand at 67.859 kb on + strand at 67.859 kb on + strand at 67.859 kb on + strand at 67.859 kb on + strand at 67.860 kb on - strand at 67.860 kb on - strand at 67.860 kb on - strand at 67.871 kb on + strand at 67.871 kb on + strand at 67.871 kb on + strand at 67.871 kb on + strand at 67.871 kb on + strand at 67.871 kb on + strand at 67.871 kb on + strand at 67.872 kb on - strand at 67.890 kb on + strand at 67.890 kb on + strand at 67.890 kb on + strand at 67.890 kb on + strand at 67.890 kb on + strand at 67.890 kb on + strand at 67.890 kb on + strand at 67.890 kb on + strand at 67.890 kb on + strand at 67.890 kb on + strand at 67.890 kb on + strand at 67.891 kb on - strand at 67.891 kb on - strand at 67.891 kb on - strand at 67.891 kb on - strand at 67.997 kb on - strand at 68.014 kb on + strand, within GFF6278 at 68.014 kb on + strand, within GFF6278 at 68.014 kb on + strand, within GFF6278 at 68.014 kb on + strand, within GFF6278 at 68.015 kb on - strand, within GFF6278 at 68.015 kb on - strand, within GFF6278 at 68.015 kb on - strand, within GFF6278 at 68.115 kb on + strand, within GFF6278 at 68.115 kb on + strand, within GFF6278 at 68.115 kb on + strand, within GFF6278 at 68.115 kb on + strand, within GFF6278 at 68.115 kb on + strand, within GFF6278 at 68.115 kb on + strand, within GFF6278 at 68.115 kb on + strand, within GFF6278 at 68.116 kb on - strand, within GFF6278 at 68.116 kb on - strand, within GFF6278 at 68.116 kb on - strand, within GFF6278 at 68.116 kb on - strand, within GFF6278 at 68.116 kb on - strand, within GFF6278 at 68.116 kb on - strand, within GFF6278 at 68.116 kb on - strand, within GFF6278 at 68.116 kb on - strand, within GFF6278 at 68.116 kb on - strand, within GFF6278 at 68.116 kb on - strand, within GFF6278 at 68.116 kb on - strand, within GFF6278 at 68.116 kb on - strand, within GFF6278 at 68.175 kb on + strand, within GFF6278 at 68.175 kb on + strand, within GFF6278 at 68.175 kb on + strand, within GFF6278 at 68.175 kb on + strand, within GFF6278 at 68.175 kb on + strand, within GFF6278 at 68.176 kb on - strand, within GFF6278 at 68.176 kb on - strand, within GFF6278 at 68.176 kb on - strand, within GFF6278 at 68.176 kb on - strand, within GFF6278 at 68.244 kb on + strand, within GFF6278 at 68.244 kb on + strand, within GFF6278 at 68.354 kb on + strand, within GFF6278 at 68.354 kb on + strand, within GFF6278 at 68.354 kb on + strand, within GFF6278 at 68.355 kb on - strand, within GFF6278 at 68.355 kb on - strand, within GFF6278 at 68.364 kb on + strand, within GFF6278 at 68.364 kb on + strand, within GFF6278 at 68.364 kb on + strand, within GFF6278 at 68.364 kb on + strand, within GFF6278 at 68.365 kb on - strand, within GFF6278 at 68.365 kb on - strand, within GFF6278 at 68.365 kb on - strand, within GFF6278 at 68.544 kb on + strand, within GFF6278 at 68.544 kb on + strand, within GFF6278 at 68.544 kb on + strand, within GFF6278 at 68.545 kb on - strand, within GFF6278 at 68.545 kb on - strand, within GFF6278
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4 remove 66,029 + GFF6276 0.21 +1.4 66,029 + GFF6276 0.21 -1.4 66,030 - GFF6276 0.21 +0.3 66,030 - GFF6276 0.21 -0.8 66,131 + GFF6276 0.29 -2.1 66,131 + GFF6276 0.29 -0.3 66,132 - GFF6276 0.29 +1.7 66,132 - GFF6276 0.29 -0.8 66,132 - GFF6276 0.29 +0.1 66,263 + GFF6276 0.40 +0.6 66,263 + GFF6276 0.40 -3.0 66,264 - GFF6276 0.40 -1.8 66,264 - GFF6276 0.40 +1.3 66,326 + GFF6276 0.46 +0.4 66,326 + GFF6276 0.46 -2.5 66,326 + GFF6276 0.46 +0.5 66,326 + GFF6276 0.46 +0.6 66,326 + GFF6276 0.46 -1.0 66,326 + GFF6276 0.46 -2.1 66,326 + GFF6276 0.46 +1.9 66,326 + GFF6276 0.46 -0.8 66,326 + GFF6276 0.46 -0.4 66,326 + GFF6276 0.46 +0.6 66,326 + GFF6276 0.46 -1.5 66,327 - GFF6276 0.46 +1.4 66,327 - GFF6276 0.46 -1.8 66,327 - GFF6276 0.46 -3.8 66,327 - GFF6276 0.46 -2.2 66,330 + GFF6276 0.46 +0.8 66,330 + GFF6276 0.46 +0.7 66,330 + GFF6276 0.46 -0.6 66,331 - GFF6276 0.46 -1.1 66,455 + GFF6276 0.56 +0.1 66,455 + GFF6276 0.56 +2.4 66,456 - GFF6276 0.56 +1.8 66,456 - GFF6276 0.56 +2.5 66,521 + GFF6276 0.62 -0.8 66,521 + GFF6276 0.62 +0.6 66,521 + GFF6276 0.62 -0.4 66,521 + GFF6276 0.62 -0.2 66,521 + GFF6276 0.62 -2.1 66,521 + GFF6276 0.62 -0.5 66,521 + GFF6276 0.62 -1.0 66,521 + GFF6276 0.62 -0.2 66,522 - GFF6276 0.62 +2.5 66,522 - GFF6276 0.62 -0.1 66,522 - GFF6276 0.62 +0.7 66,522 - GFF6276 0.62 +0.7 66,522 - GFF6276 0.62 -0.8 66,522 - GFF6276 0.62 +0.2 66,522 - GFF6276 0.62 +0.2 66,522 - GFF6276 0.62 +1.7 66,522 - GFF6276 0.62 -2.7 66,522 - GFF6276 0.62 -1.2 66,522 - GFF6276 0.62 +0.5 66,522 - GFF6276 0.62 +0.8 66,522 - GFF6276 0.62 +0.8 66,522 - GFF6276 0.62 -1.9 66,522 - GFF6276 0.62 +1.7 66,710 + GFF6276 0.78 -2.0 66,710 + GFF6276 0.78 +0.0 66,710 + GFF6276 0.78 -0.9 66,710 + GFF6276 0.78 +0.2 66,710 + GFF6276 0.78 -0.5 66,710 + GFF6276 0.78 -2.3 66,710 + GFF6276 0.78 -1.0 66,710 + GFF6276 0.78 -0.8 66,711 - GFF6276 0.78 -0.6 66,711 - GFF6276 0.78 -1.7 66,711 - GFF6276 0.78 +0.2 66,711 - GFF6276 0.78 -0.2 66,711 - GFF6276 0.78 -0.1 66,711 - GFF6276 0.78 +4.5 67,044 + -1.1 67,045 - -0.7 67,152 + GFF6277 0.17 -3.2 67,152 + GFF6277 0.17 -1.6 67,153 - GFF6277 0.17 -0.1 67,153 - GFF6277 0.17 -1.7 67,153 - GFF6277 0.17 +0.5 67,153 - GFF6277 0.17 -0.8 67,153 - GFF6277 0.17 +0.1 67,153 - GFF6277 0.17 -2.5 67,224 + GFF6277 0.26 -3.0 67,224 + GFF6277 0.26 +0.2 67,224 + GFF6277 0.26 +0.3 67,224 + GFF6277 0.26 +1.0 67,224 + GFF6277 0.26 -0.2 67,224 + GFF6277 0.26 -3.7 67,224 + GFF6277 0.26 -0.5 67,225 - GFF6277 0.26 -1.5 67,225 - GFF6277 0.26 -2.2 67,225 - GFF6277 0.26 +1.5 67,225 - GFF6277 0.26 +1.2 67,356 + GFF6277 0.43 -1.1 67,356 + GFF6277 0.43 -0.6 67,356 + GFF6277 0.43 -1.2 67,356 + GFF6277 0.43 +2.3 67,356 + GFF6277 0.43 -0.1 67,356 + GFF6277 0.43 -1.6 67,356 + GFF6277 0.43 -1.5 67,356 + GFF6277 0.43 -0.7 67,356 + GFF6277 0.43 -1.5 67,357 - GFF6277 0.43 +2.7 67,357 - GFF6277 0.43 +1.8 67,357 - GFF6277 0.43 +0.7 67,357 - GFF6277 0.43 +1.1 67,357 - GFF6277 0.43 +1.1 67,357 - GFF6277 0.43 +0.7 67,357 - GFF6277 0.43 -0.1 67,357 - GFF6277 0.43 -0.3 67,357 - GFF6277 0.43 +0.9 67,357 - GFF6277 0.43 -0.3 67,357 - GFF6277 0.43 -1.7 67,357 - GFF6277 0.43 +0.8 67,611 + GFF6277 0.75 -2.1 67,826 + -1.4 67,826 + -0.3 67,826 + +0.9 67,826 + -1.5 67,826 + -1.0 67,826 + -0.3 67,826 + -0.8 67,826 + -1.1 67,826 + -1.7 67,826 + -0.5 67,826 + -1.0 67,826 + -0.5 67,826 + -2.1 67,826 + -0.8 67,826 + +0.9 67,827 - +0.9 67,827 - +1.5 67,827 - +1.3 67,827 - -1.5 67,827 - -3.2 67,827 - -1.2 67,827 - -2.0 67,827 - -1.0 67,827 - -0.1 67,827 - -0.7 67,827 - +1.6 67,827 - -0.1 67,827 - +1.3 67,827 - +1.3 67,827 - -0.1 67,827 - -0.3 67,853 + -2.1 67,853 + +0.3 67,853 + +1.8 67,853 + +0.2 67,853 + -0.3 67,853 + -0.2 67,854 - -0.8 67,854 - -0.6 67,854 - -0.4 67,854 - +1.5 67,854 - -1.4 67,859 + -0.2 67,859 + +0.2 67,859 + +0.3 67,859 + +0.2 67,859 + +1.5 67,859 + -0.3 67,860 - -0.8 67,860 - -1.7 67,860 - -2.9 67,871 + +1.0 67,871 + -0.6 67,871 + +0.9 67,871 + +0.7 67,871 + -0.7 67,871 + -1.0 67,871 + -1.2 67,872 - -0.3 67,890 + -1.2 67,890 + +0.9 67,890 + -1.2 67,890 + -2.6 67,890 + -0.1 67,890 + -1.9 67,890 + -2.1 67,890 + +1.0 67,890 + -2.9 67,890 + -0.6 67,890 + -2.4 67,891 - +0.2 67,891 - -1.3 67,891 - -2.1 67,891 - -1.1 67,997 - +0.0 68,014 + GFF6278 0.11 +0.9 68,014 + GFF6278 0.11 -2.4 68,014 + GFF6278 0.11 -1.1 68,014 + GFF6278 0.11 +0.5 68,015 - GFF6278 0.11 -2.3 68,015 - GFF6278 0.11 +0.1 68,015 - GFF6278 0.11 +0.9 68,115 + GFF6278 0.17 -2.3 68,115 + GFF6278 0.17 -2.0 68,115 + GFF6278 0.17 -0.6 68,115 + GFF6278 0.17 +1.4 68,115 + GFF6278 0.17 +0.9 68,115 + GFF6278 0.17 -0.3 68,115 + GFF6278 0.17 +0.4 68,116 - GFF6278 0.17 +1.1 68,116 - GFF6278 0.17 +0.0 68,116 - GFF6278 0.17 +0.9 68,116 - GFF6278 0.17 -1.6 68,116 - GFF6278 0.17 -1.4 68,116 - GFF6278 0.17 +0.4 68,116 - GFF6278 0.17 +1.4 68,116 - GFF6278 0.17 +0.9 68,116 - GFF6278 0.17 +1.0 68,116 - GFF6278 0.17 -0.8 68,116 - GFF6278 0.17 -1.6 68,116 - GFF6278 0.17 -1.0 68,175 + GFF6278 0.20 +0.5 68,175 + GFF6278 0.20 +1.2 68,175 + GFF6278 0.20 -0.6 68,175 + GFF6278 0.20 -0.3 68,175 + GFF6278 0.20 -0.9 68,176 - GFF6278 0.20 +0.3 68,176 - GFF6278 0.20 -0.5 68,176 - GFF6278 0.20 -1.2 68,176 - GFF6278 0.20 +0.9 68,244 + GFF6278 0.24 +0.0 68,244 + GFF6278 0.24 -2.7 68,354 + GFF6278 0.30 +1.7 68,354 + GFF6278 0.30 +0.2 68,354 + GFF6278 0.30 +1.3 68,355 - GFF6278 0.31 -0.3 68,355 - GFF6278 0.31 +0.0 68,364 + GFF6278 0.31 +1.0 68,364 + GFF6278 0.31 +0.3 68,364 + GFF6278 0.31 +0.8 68,364 + GFF6278 0.31 +1.0 68,365 - GFF6278 0.31 +1.2 68,365 - GFF6278 0.31 +2.0 68,365 - GFF6278 0.31 -0.3 68,544 + GFF6278 0.41 +0.3 68,544 + GFF6278 0.41 +0.9 68,544 + GFF6278 0.41 +0.6 68,545 - GFF6278 0.41 -0.5 68,545 - GFF6278 0.41 -0.5
Or see this region's nucleotide sequence