Experiment: Community=Kojac gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6116 and GFF6117 are separated by 43 nucleotides GFF6117 and GFF6118 are separated by 203 nucleotides
GFF6116 - MlrC, at 15,732 to 17,186
GFF6116
GFF6117 - Glycine/D-amino acid oxidases (deaminating), at 17,230 to 18,384
GFF6117
GFF6118 - Transcriptional regulator, MerR family, at 18,588 to 19,316
GFF6118
Position (kb) 17
18
19 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 16.357 kb on + strand, within GFF6116 at 16.357 kb on + strand, within GFF6116 at 16.447 kb on + strand, within GFF6116 at 16.447 kb on + strand, within GFF6116 at 16.706 kb on - strand, within GFF6116 at 16.949 kb on - strand, within GFF6116 at 17.214 kb on + strand at 17.215 kb on - strand at 17.366 kb on + strand, within GFF6117 at 17.618 kb on + strand, within GFF6117 at 17.618 kb on + strand, within GFF6117 at 17.619 kb on - strand, within GFF6117 at 17.619 kb on - strand, within GFF6117 at 17.796 kb on - strand, within GFF6117 at 17.952 kb on - strand, within GFF6117 at 18.207 kb on - strand, within GFF6117 at 18.347 kb on + strand at 18.909 kb on + strand, within GFF6118 at 18.909 kb on + strand, within GFF6118 at 18.931 kb on - strand, within GFF6118 at 19.050 kb on + strand, within GFF6118 at 19.050 kb on + strand, within GFF6118 at 19.050 kb on + strand, within GFF6118 at 19.051 kb on - strand, within GFF6118 at 19.125 kb on + strand, within GFF6118 at 19.152 kb on + strand, within GFF6118 at 19.152 kb on + strand, within GFF6118 at 19.153 kb on - strand, within GFF6118 at 19.374 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4 remove 16,357 + GFF6116 0.43 -3.1 16,357 + GFF6116 0.43 +0.3 16,447 + GFF6116 0.49 -2.6 16,447 + GFF6116 0.49 -0.2 16,706 - GFF6116 0.67 -0.2 16,949 - GFF6116 0.84 -1.5 17,214 + +0.2 17,215 - -1.4 17,366 + GFF6117 0.12 -1.3 17,618 + GFF6117 0.34 -1.4 17,618 + GFF6117 0.34 -0.2 17,619 - GFF6117 0.34 -2.6 17,619 - GFF6117 0.34 -1.2 17,796 - GFF6117 0.49 +1.9 17,952 - GFF6117 0.63 -0.0 18,207 - GFF6117 0.85 -1.4 18,347 + -1.4 18,909 + GFF6118 0.44 +1.3 18,909 + GFF6118 0.44 -2.1 18,931 - GFF6118 0.47 -1.9 19,050 + GFF6118 0.63 +0.5 19,050 + GFF6118 0.63 +2.0 19,050 + GFF6118 0.63 -1.4 19,051 - GFF6118 0.64 -0.8 19,125 + GFF6118 0.74 +1.0 19,152 + GFF6118 0.77 -0.5 19,152 + GFF6118 0.77 +0.5 19,153 - GFF6118 0.78 +1.1 19,374 + -1.2
Or see this region's nucleotide sequence