Experiment: Community=Kojac gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6095 and GFF6096 overlap by 4 nucleotides GFF6096 and GFF6097 are separated by 15 nucleotides GFF6097 and GFF6098 are separated by 47 nucleotides
GFF6095 - 1,2-phenylacetyl-CoA epoxidase, subunit C (EC 1.14.13.149), at 156,545 to 157,324
GFF6095
GFF6096 - 1,2-phenylacetyl-CoA epoxidase, subunit D (EC 1.14.13.149), at 157,321 to 157,845
GFF6096
GFF6097 - 1,2-phenylacetyl-CoA epoxidase, subunit E (EC 1.14.13.149), at 157,861 to 158,946
GFF6097
GFF6098 - ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate), at 158,994 to 160,139
GFF6098
Position (kb) 157
158
159 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 157.070 kb on + strand, within GFF6095 at 157.070 kb on + strand, within GFF6095 at 157.071 kb on - strand, within GFF6095 at 157.071 kb on - strand, within GFF6095 at 157.071 kb on - strand, within GFF6095 at 157.071 kb on - strand, within GFF6095 at 157.268 kb on + strand at 157.268 kb on + strand at 157.268 kb on + strand at 157.268 kb on + strand at 157.269 kb on - strand at 157.269 kb on - strand at 157.474 kb on + strand, within GFF6096 at 157.628 kb on - strand, within GFF6096 at 157.795 kb on + strand at 157.795 kb on + strand at 157.843 kb on + strand at 157.843 kb on + strand at 157.844 kb on - strand at 157.844 kb on - strand at 157.984 kb on + strand, within GFF6097 at 158.303 kb on - strand, within GFF6097 at 158.365 kb on + strand, within GFF6097 at 158.503 kb on + strand, within GFF6097 at 158.503 kb on + strand, within GFF6097 at 158.503 kb on + strand, within GFF6097 at 158.503 kb on + strand, within GFF6097 at 158.504 kb on - strand, within GFF6097 at 158.504 kb on - strand, within GFF6097 at 158.504 kb on - strand, within GFF6097 at 158.504 kb on - strand, within GFF6097 at 158.504 kb on - strand, within GFF6097 at 158.885 kb on + strand at 158.886 kb on - strand at 158.886 kb on - strand at 158.886 kb on - strand at 158.947 kb on + strand at 158.948 kb on - strand at 158.951 kb on + strand at 158.951 kb on + strand at 158.952 kb on - strand at 159.171 kb on + strand, within GFF6098 at 159.171 kb on + strand, within GFF6098 at 159.171 kb on + strand, within GFF6098 at 159.171 kb on + strand, within GFF6098 at 159.171 kb on + strand, within GFF6098 at 159.171 kb on + strand, within GFF6098 at 159.171 kb on + strand, within GFF6098 at 159.171 kb on + strand, within GFF6098 at 159.171 kb on + strand, within GFF6098 at 159.171 kb on + strand, within GFF6098 at 159.172 kb on - strand, within GFF6098 at 159.172 kb on - strand, within GFF6098 at 159.172 kb on - strand, within GFF6098 at 159.172 kb on - strand, within GFF6098 at 159.489 kb on + strand, within GFF6098 at 159.490 kb on - strand, within GFF6098 at 159.564 kb on + strand, within GFF6098 at 159.565 kb on - strand, within GFF6098 at 159.708 kb on + strand, within GFF6098 at 159.708 kb on + strand, within GFF6098 at 159.708 kb on + strand, within GFF6098 at 159.709 kb on - strand, within GFF6098 at 159.709 kb on - strand, within GFF6098 at 159.709 kb on - strand, within GFF6098 at 159.709 kb on - strand, within GFF6098 at 159.849 kb on + strand, within GFF6098 at 159.849 kb on + strand, within GFF6098 at 159.849 kb on + strand, within GFF6098 at 159.849 kb on + strand, within GFF6098 at 159.850 kb on - strand, within GFF6098 at 159.861 kb on + strand, within GFF6098 at 159.861 kb on + strand, within GFF6098 at 159.861 kb on + strand, within GFF6098
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4 remove 157,070 + GFF6095 0.67 -0.5 157,070 + GFF6095 0.67 +2.3 157,071 - GFF6095 0.67 -0.1 157,071 - GFF6095 0.67 +1.3 157,071 - GFF6095 0.67 -0.3 157,071 - GFF6095 0.67 -0.3 157,268 + -1.1 157,268 + -0.1 157,268 + +0.3 157,268 + -1.1 157,269 - -0.9 157,269 - -2.9 157,474 + GFF6096 0.29 +0.8 157,628 - GFF6096 0.58 -0.7 157,795 + -1.4 157,795 + -1.4 157,843 + -2.1 157,843 + -0.5 157,844 - +0.1 157,844 - -0.1 157,984 + GFF6097 0.11 -1.3 158,303 - GFF6097 0.41 -2.2 158,365 + GFF6097 0.46 +3.6 158,503 + GFF6097 0.59 +0.7 158,503 + GFF6097 0.59 -1.1 158,503 + GFF6097 0.59 -0.3 158,503 + GFF6097 0.59 -0.9 158,504 - GFF6097 0.59 -1.4 158,504 - GFF6097 0.59 -3.3 158,504 - GFF6097 0.59 +1.3 158,504 - GFF6097 0.59 -1.6 158,504 - GFF6097 0.59 -0.7 158,885 + -0.1 158,886 - +2.3 158,886 - -1.1 158,886 - +2.3 158,947 + -0.4 158,948 - -1.6 158,951 + -1.1 158,951 + +0.2 158,952 - -2.4 159,171 + GFF6098 0.15 -1.2 159,171 + GFF6098 0.15 -1.6 159,171 + GFF6098 0.15 -2.7 159,171 + GFF6098 0.15 +1.9 159,171 + GFF6098 0.15 -1.6 159,171 + GFF6098 0.15 +1.8 159,171 + GFF6098 0.15 -0.3 159,171 + GFF6098 0.15 -1.1 159,171 + GFF6098 0.15 +1.7 159,171 + GFF6098 0.15 +1.0 159,172 - GFF6098 0.16 -0.8 159,172 - GFF6098 0.16 +0.5 159,172 - GFF6098 0.16 -0.9 159,172 - GFF6098 0.16 +1.0 159,489 + GFF6098 0.43 -0.7 159,490 - GFF6098 0.43 +0.3 159,564 + GFF6098 0.50 +1.4 159,565 - GFF6098 0.50 -3.2 159,708 + GFF6098 0.62 -3.0 159,708 + GFF6098 0.62 +2.6 159,708 + GFF6098 0.62 -0.2 159,709 - GFF6098 0.62 +2.3 159,709 - GFF6098 0.62 -0.3 159,709 - GFF6098 0.62 +0.2 159,709 - GFF6098 0.62 +1.0 159,849 + GFF6098 0.75 +1.1 159,849 + GFF6098 0.75 -0.3 159,849 + GFF6098 0.75 +1.3 159,849 + GFF6098 0.75 +0.5 159,850 - GFF6098 0.75 -0.1 159,861 + GFF6098 0.76 -3.1 159,861 + GFF6098 0.76 -2.1 159,861 + GFF6098 0.76 -2.3
Or see this region's nucleotide sequence