Experiment: Community=Kojac gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6081 and GFF6082 are separated by 43 nucleotides GFF6082 and GFF6083 overlap by 20 nucleotides GFF6083 and GFF6084 overlap by 4 nucleotides
GFF6081 - Peptidase S1 and S6, chymotrypsin/Hap, at 143,063 to 144,082
GFF6081
GFF6082 - MoxR-like ATPase in aerotolerance operon, at 144,126 to 145,139
GFF6082
GFF6083 - hypothetical protein PA3071, at 145,120 to 146,109
GFF6083
GFF6084 - Aerotolerance protein BatA, at 146,106 to 147,143
GFF6084
Position (kb) 144
145
146 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 143.435 kb on + strand, within GFF6081 at 143.435 kb on + strand, within GFF6081 at 143.435 kb on + strand, within GFF6081 at 143.436 kb on - strand, within GFF6081 at 144.189 kb on + strand at 144.402 kb on + strand, within GFF6082 at 144.402 kb on + strand, within GFF6082 at 144.402 kb on + strand, within GFF6082 at 144.402 kb on + strand, within GFF6082 at 144.403 kb on - strand, within GFF6082 at 144.618 kb on + strand, within GFF6082 at 144.618 kb on + strand, within GFF6082 at 144.618 kb on + strand, within GFF6082 at 144.619 kb on - strand, within GFF6082 at 144.792 kb on + strand, within GFF6082 at 144.792 kb on + strand, within GFF6082 at 144.792 kb on + strand, within GFF6082 at 144.792 kb on + strand, within GFF6082 at 144.792 kb on + strand, within GFF6082 at 144.792 kb on + strand, within GFF6082 at 144.793 kb on - strand, within GFF6082 at 144.967 kb on - strand, within GFF6082 at 144.967 kb on - strand, within GFF6082 at 145.032 kb on + strand, within GFF6082 at 145.032 kb on + strand, within GFF6082 at 145.033 kb on - strand, within GFF6082 at 145.033 kb on - strand, within GFF6082 at 145.137 kb on + strand at 145.137 kb on + strand at 145.138 kb on - strand at 145.138 kb on - strand at 145.310 kb on - strand, within GFF6083 at 145.310 kb on - strand, within GFF6083 at 145.310 kb on - strand, within GFF6083 at 145.546 kb on + strand, within GFF6083 at 146.053 kb on - strand at 146.053 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4 remove 143,435 + GFF6081 0.36 +0.2 143,435 + GFF6081 0.36 -0.1 143,435 + GFF6081 0.36 +1.6 143,436 - GFF6081 0.37 -1.3 144,189 + +1.4 144,402 + GFF6082 0.27 -2.5 144,402 + GFF6082 0.27 -0.1 144,402 + GFF6082 0.27 -1.3 144,402 + GFF6082 0.27 -1.8 144,403 - GFF6082 0.27 +0.3 144,618 + GFF6082 0.49 -3.1 144,618 + GFF6082 0.49 +1.1 144,618 + GFF6082 0.49 -1.1 144,619 - GFF6082 0.49 +4.0 144,792 + GFF6082 0.66 -1.7 144,792 + GFF6082 0.66 +1.1 144,792 + GFF6082 0.66 +0.2 144,792 + GFF6082 0.66 +0.8 144,792 + GFF6082 0.66 -0.6 144,792 + GFF6082 0.66 +0.3 144,793 - GFF6082 0.66 -2.0 144,967 - GFF6082 0.83 +1.5 144,967 - GFF6082 0.83 +0.4 145,032 + GFF6082 0.89 -1.3 145,032 + GFF6082 0.89 +1.2 145,033 - GFF6082 0.89 +0.3 145,033 - GFF6082 0.89 +1.1 145,137 + -0.8 145,137 + +0.5 145,138 - +1.6 145,138 - -1.1 145,310 - GFF6083 0.19 -2.1 145,310 - GFF6083 0.19 -1.1 145,310 - GFF6083 0.19 -0.1 145,546 + GFF6083 0.43 -0.4 146,053 - -2.1 146,053 - +0.4
Or see this region's nucleotide sequence