Experiment: Community=Kojac gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6033 and GFF6034 are separated by 240 nucleotides GFF6034 and GFF6035 are separated by 21 nucleotides GFF6035 and GFF6036 are separated by 176 nucleotides
GFF6033 - Branched-chain amino acid ABC transporter, permease protein LivH (TC 3.A.1.4.1), at 93,461 to 94,390
GFF6033
GFF6034 - Replication-associated recombination protein RarA, at 94,631 to 95,923
GFF6034
GFF6035 - Outer membrane lipoprotein carrier protein LolA, at 95,945 to 96,577
GFF6035
GFF6036 - DNA translocase FtsK, at 96,754 to 99,201
GFF6036
Position (kb) 94
95
96 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 93.733 kb on - strand, within GFF6033 at 93.744 kb on + strand, within GFF6033 at 93.744 kb on + strand, within GFF6033 at 93.744 kb on + strand, within GFF6033 at 93.744 kb on + strand, within GFF6033 at 93.744 kb on + strand, within GFF6033 at 93.745 kb on - strand, within GFF6033 at 93.745 kb on - strand, within GFF6033 at 93.745 kb on - strand, within GFF6033 at 93.745 kb on - strand, within GFF6033 at 93.745 kb on - strand, within GFF6033 at 93.745 kb on - strand, within GFF6033 at 93.745 kb on - strand, within GFF6033 at 93.745 kb on - strand, within GFF6033 at 93.882 kb on + strand, within GFF6033 at 93.882 kb on + strand, within GFF6033 at 93.883 kb on - strand, within GFF6033 at 93.883 kb on - strand, within GFF6033 at 93.883 kb on - strand, within GFF6033 at 93.883 kb on - strand, within GFF6033 at 94.003 kb on - strand, within GFF6033 at 94.265 kb on + strand, within GFF6033 at 94.265 kb on + strand, within GFF6033 at 94.265 kb on + strand, within GFF6033 at 94.265 kb on + strand, within GFF6033 at 94.266 kb on - strand, within GFF6033 at 94.266 kb on - strand, within GFF6033 at 94.266 kb on - strand, within GFF6033 at 94.305 kb on + strand at 94.306 kb on - strand at 94.317 kb on + strand at 94.318 kb on - strand at 94.328 kb on + strand at 94.329 kb on - strand at 94.338 kb on + strand at 94.338 kb on + strand at 94.338 kb on + strand at 94.338 kb on + strand at 94.338 kb on + strand at 94.338 kb on + strand at 94.339 kb on - strand at 94.339 kb on - strand at 94.339 kb on - strand at 94.339 kb on - strand at 94.339 kb on - strand at 94.339 kb on - strand at 94.390 kb on + strand at 94.390 kb on + strand at 94.390 kb on + strand at 94.391 kb on - strand at 94.391 kb on - strand at 94.391 kb on - strand at 94.391 kb on - strand at 94.391 kb on - strand at 94.391 kb on - strand at 94.402 kb on + strand at 94.402 kb on + strand at 94.402 kb on + strand at 94.402 kb on + strand at 94.402 kb on + strand at 94.403 kb on - strand at 94.403 kb on - strand at 94.403 kb on - strand at 94.403 kb on - strand at 94.403 kb on - strand at 94.468 kb on + strand at 94.520 kb on + strand at 94.520 kb on + strand at 94.520 kb on + strand at 94.521 kb on - strand at 94.521 kb on - strand at 94.583 kb on + strand at 94.583 kb on + strand at 94.583 kb on + strand at 94.583 kb on + strand at 94.583 kb on + strand at 94.583 kb on + strand at 94.583 kb on + strand at 94.583 kb on + strand at 94.583 kb on + strand at 94.584 kb on - strand at 94.584 kb on - strand at 94.584 kb on - strand at 94.584 kb on - strand at 94.584 kb on - strand at 94.584 kb on - strand at 94.584 kb on - strand at 94.584 kb on - strand at 94.584 kb on - strand at 94.629 kb on + strand at 94.629 kb on + strand at 94.630 kb on - strand at 94.630 kb on - strand at 94.630 kb on - strand at 94.630 kb on - strand at 94.717 kb on - strand at 94.717 kb on - strand at 94.792 kb on - strand, within GFF6034 at 94.798 kb on - strand, within GFF6034 at 94.809 kb on + strand, within GFF6034 at 94.809 kb on + strand, within GFF6034 at 94.905 kb on + strand, within GFF6034 at 94.905 kb on + strand, within GFF6034 at 94.905 kb on + strand, within GFF6034 at 94.905 kb on + strand, within GFF6034 at 94.905 kb on + strand, within GFF6034 at 94.905 kb on + strand, within GFF6034 at 94.906 kb on - strand, within GFF6034 at 94.906 kb on - strand, within GFF6034 at 94.906 kb on - strand, within GFF6034 at 94.906 kb on - strand, within GFF6034 at 94.906 kb on - strand, within GFF6034 at 94.906 kb on - strand, within GFF6034 at 94.914 kb on + strand, within GFF6034 at 94.915 kb on - strand, within GFF6034 at 94.915 kb on - strand, within GFF6034 at 94.915 kb on - strand, within GFF6034 at 94.947 kb on + strand, within GFF6034 at 94.947 kb on + strand, within GFF6034 at 94.947 kb on + strand, within GFF6034 at 94.947 kb on + strand, within GFF6034 at 94.947 kb on + strand, within GFF6034 at 94.947 kb on + strand, within GFF6034 at 94.947 kb on + strand, within GFF6034 at 94.947 kb on + strand, within GFF6034 at 94.948 kb on - strand, within GFF6034 at 94.948 kb on - strand, within GFF6034 at 94.948 kb on - strand, within GFF6034 at 94.948 kb on - strand, within GFF6034 at 94.948 kb on - strand, within GFF6034 at 95.001 kb on + strand, within GFF6034 at 95.001 kb on + strand, within GFF6034 at 95.001 kb on + strand, within GFF6034 at 95.001 kb on + strand, within GFF6034 at 95.002 kb on - strand, within GFF6034 at 95.002 kb on - strand, within GFF6034 at 95.002 kb on - strand, within GFF6034 at 95.075 kb on + strand, within GFF6034 at 95.075 kb on + strand, within GFF6034 at 95.075 kb on + strand, within GFF6034 at 95.076 kb on - strand, within GFF6034 at 95.076 kb on - strand, within GFF6034 at 95.076 kb on - strand, within GFF6034 at 95.076 kb on - strand, within GFF6034 at 95.076 kb on - strand, within GFF6034 at 95.094 kb on + strand, within GFF6034 at 95.094 kb on + strand, within GFF6034 at 95.094 kb on + strand, within GFF6034 at 95.095 kb on - strand, within GFF6034 at 95.095 kb on - strand, within GFF6034 at 95.136 kb on + strand, within GFF6034 at 95.136 kb on + strand, within GFF6034 at 95.173 kb on + strand, within GFF6034 at 95.173 kb on + strand, within GFF6034 at 95.173 kb on + strand, within GFF6034 at 95.174 kb on - strand, within GFF6034 at 95.174 kb on - strand, within GFF6034 at 95.196 kb on + strand, within GFF6034 at 95.196 kb on + strand, within GFF6034 at 95.196 kb on + strand, within GFF6034 at 95.197 kb on - strand, within GFF6034 at 95.197 kb on - strand, within GFF6034 at 95.349 kb on + strand, within GFF6034 at 95.349 kb on + strand, within GFF6034 at 95.460 kb on + strand, within GFF6034 at 95.460 kb on + strand, within GFF6034 at 95.460 kb on + strand, within GFF6034 at 95.460 kb on + strand, within GFF6034 at 95.460 kb on + strand, within GFF6034 at 95.461 kb on - strand, within GFF6034 at 95.461 kb on - strand, within GFF6034 at 95.461 kb on - strand, within GFF6034 at 95.461 kb on - strand, within GFF6034 at 95.461 kb on - strand, within GFF6034 at 95.461 kb on - strand, within GFF6034 at 95.932 kb on + strand at 95.932 kb on + strand at 95.933 kb on - strand at 95.933 kb on - strand at 95.933 kb on - strand at 95.933 kb on - strand at 95.933 kb on - strand at 95.933 kb on - strand at 95.946 kb on + strand at 95.946 kb on + strand at 95.946 kb on + strand at 95.947 kb on - strand at 95.947 kb on - strand at 95.947 kb on - strand at 95.947 kb on - strand at 96.557 kb on + strand at 96.558 kb on - strand at 96.594 kb on + strand at 96.594 kb on + strand at 96.594 kb on + strand at 96.594 kb on + strand at 96.594 kb on + strand at 96.595 kb on - strand at 96.595 kb on - strand at 96.595 kb on - strand at 96.595 kb on - strand at 96.600 kb on + strand at 96.600 kb on + strand at 96.600 kb on + strand at 96.600 kb on + strand at 96.600 kb on + strand at 96.600 kb on + strand at 96.600 kb on + strand at 96.601 kb on - strand at 96.601 kb on - strand at 96.601 kb on - strand at 96.601 kb on - strand at 96.601 kb on - strand at 96.601 kb on - strand at 96.601 kb on - strand at 96.640 kb on + strand at 96.665 kb on + strand at 96.665 kb on + strand at 96.665 kb on + strand at 96.665 kb on + strand at 96.665 kb on + strand at 96.666 kb on - strand at 96.666 kb on - strand at 96.666 kb on - strand at 96.666 kb on - strand at 96.755 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4 remove 93,733 - GFF6033 0.29 -1.9 93,744 + GFF6033 0.30 -2.9 93,744 + GFF6033 0.30 -1.4 93,744 + GFF6033 0.30 +2.3 93,744 + GFF6033 0.30 -1.7 93,744 + GFF6033 0.30 -0.3 93,745 - GFF6033 0.31 -0.9 93,745 - GFF6033 0.31 +0.7 93,745 - GFF6033 0.31 -2.2 93,745 - GFF6033 0.31 -0.5 93,745 - GFF6033 0.31 -0.5 93,745 - GFF6033 0.31 -2.0 93,745 - GFF6033 0.31 -0.7 93,745 - GFF6033 0.31 -2.7 93,882 + GFF6033 0.45 -2.7 93,882 + GFF6033 0.45 -0.3 93,883 - GFF6033 0.45 +0.0 93,883 - GFF6033 0.45 -1.9 93,883 - GFF6033 0.45 +0.3 93,883 - GFF6033 0.45 -3.4 94,003 - GFF6033 0.58 -3.2 94,265 + GFF6033 0.86 -1.3 94,265 + GFF6033 0.86 -2.7 94,265 + GFF6033 0.86 +0.3 94,265 + GFF6033 0.86 +0.7 94,266 - GFF6033 0.87 -1.5 94,266 - GFF6033 0.87 +0.2 94,266 - GFF6033 0.87 +2.1 94,305 + -2.3 94,306 - +3.3 94,317 + -1.5 94,318 - -1.1 94,328 + -2.1 94,329 - +0.2 94,338 + +2.3 94,338 + -1.5 94,338 + -2.1 94,338 + +1.3 94,338 + -0.4 94,338 + -0.7 94,339 - -0.1 94,339 - -0.1 94,339 - -1.9 94,339 - -0.7 94,339 - -1.3 94,339 - +0.3 94,390 + -0.9 94,390 + -2.2 94,390 + -2.5 94,391 - -2.4 94,391 - -0.7 94,391 - -0.7 94,391 - -1.6 94,391 - +0.7 94,391 - +3.3 94,402 + +0.3 94,402 + +0.5 94,402 + -0.3 94,402 + +1.8 94,402 + -3.4 94,403 - +1.5 94,403 - +1.9 94,403 - -0.1 94,403 - +1.0 94,403 - +1.3 94,468 + -1.2 94,520 + +0.5 94,520 + +0.1 94,520 + +0.3 94,521 - +1.6 94,521 - +2.3 94,583 + -0.6 94,583 + +0.2 94,583 + -0.1 94,583 + +2.1 94,583 + -0.2 94,583 + -0.7 94,583 + +2.2 94,583 + -2.8 94,583 + +0.0 94,584 - +1.6 94,584 - -1.7 94,584 - +1.0 94,584 - -1.2 94,584 - +0.7 94,584 - +0.7 94,584 - +0.3 94,584 - -0.7 94,584 - +0.9 94,629 + +0.1 94,629 + -1.4 94,630 - +2.0 94,630 - +0.1 94,630 - +2.5 94,630 - +1.0 94,717 - +0.0 94,717 - -1.0 94,792 - GFF6034 0.12 -1.8 94,798 - GFF6034 0.13 -0.2 94,809 + GFF6034 0.14 -2.1 94,809 + GFF6034 0.14 +0.3 94,905 + GFF6034 0.21 +0.3 94,905 + GFF6034 0.21 -0.5 94,905 + GFF6034 0.21 -1.7 94,905 + GFF6034 0.21 -1.2 94,905 + GFF6034 0.21 +0.7 94,905 + GFF6034 0.21 +1.0 94,906 - GFF6034 0.21 -1.8 94,906 - GFF6034 0.21 -1.3 94,906 - GFF6034 0.21 +0.3 94,906 - GFF6034 0.21 -1.3 94,906 - GFF6034 0.21 -0.7 94,906 - GFF6034 0.21 -0.2 94,914 + GFF6034 0.22 +0.9 94,915 - GFF6034 0.22 -0.6 94,915 - GFF6034 0.22 +0.6 94,915 - GFF6034 0.22 -3.8 94,947 + GFF6034 0.24 +3.3 94,947 + GFF6034 0.24 +0.1 94,947 + GFF6034 0.24 -1.8 94,947 + GFF6034 0.24 +1.0 94,947 + GFF6034 0.24 +0.5 94,947 + GFF6034 0.24 +0.7 94,947 + GFF6034 0.24 -2.0 94,947 + GFF6034 0.24 -0.1 94,948 - GFF6034 0.25 -3.8 94,948 - GFF6034 0.25 -0.3 94,948 - GFF6034 0.25 -0.1 94,948 - GFF6034 0.25 -0.0 94,948 - GFF6034 0.25 +0.7 95,001 + GFF6034 0.29 +2.1 95,001 + GFF6034 0.29 -0.5 95,001 + GFF6034 0.29 -2.6 95,001 + GFF6034 0.29 +1.6 95,002 - GFF6034 0.29 -0.3 95,002 - GFF6034 0.29 -1.2 95,002 - GFF6034 0.29 -1.3 95,075 + GFF6034 0.34 +0.3 95,075 + GFF6034 0.34 +0.7 95,075 + GFF6034 0.34 -1.2 95,076 - GFF6034 0.34 -0.4 95,076 - GFF6034 0.34 -3.3 95,076 - GFF6034 0.34 -0.1 95,076 - GFF6034 0.34 -1.7 95,076 - GFF6034 0.34 -1.6 95,094 + GFF6034 0.36 -1.8 95,094 + GFF6034 0.36 +0.7 95,094 + GFF6034 0.36 -1.4 95,095 - GFF6034 0.36 -2.0 95,095 - GFF6034 0.36 -1.5 95,136 + GFF6034 0.39 +0.1 95,136 + GFF6034 0.39 +2.3 95,173 + GFF6034 0.42 -1.0 95,173 + GFF6034 0.42 +1.5 95,173 + GFF6034 0.42 -2.2 95,174 - GFF6034 0.42 -2.6 95,174 - GFF6034 0.42 +0.1 95,196 + GFF6034 0.44 +0.3 95,196 + GFF6034 0.44 +2.3 95,196 + GFF6034 0.44 +2.3 95,197 - GFF6034 0.44 -0.1 95,197 - GFF6034 0.44 +0.4 95,349 + GFF6034 0.56 -0.2 95,349 + GFF6034 0.56 -1.2 95,460 + GFF6034 0.64 -0.3 95,460 + GFF6034 0.64 -1.8 95,460 + GFF6034 0.64 +1.1 95,460 + GFF6034 0.64 +0.3 95,460 + GFF6034 0.64 -0.3 95,461 - GFF6034 0.64 +2.3 95,461 - GFF6034 0.64 -1.8 95,461 - GFF6034 0.64 -2.7 95,461 - GFF6034 0.64 -0.5 95,461 - GFF6034 0.64 -0.9 95,461 - GFF6034 0.64 +0.4 95,932 + +0.3 95,932 + -0.5 95,933 - +0.1 95,933 - -1.3 95,933 - -1.4 95,933 - +2.6 95,933 - -0.9 95,933 - +0.8 95,946 + -1.9 95,946 + -1.9 95,946 + +0.5 95,947 - -1.1 95,947 - -2.0 95,947 - +1.2 95,947 - -0.8 96,557 + +2.3 96,558 - +2.3 96,594 + -0.0 96,594 + -1.3 96,594 + -0.5 96,594 + +0.7 96,594 + +1.7 96,595 - -0.3 96,595 - -2.8 96,595 - -3.1 96,595 - -1.9 96,600 + +0.0 96,600 + -0.9 96,600 + -0.4 96,600 + -1.7 96,600 + +2.8 96,600 + +0.3 96,600 + +0.2 96,601 - +2.2 96,601 - -0.3 96,601 - +2.3 96,601 - -0.9 96,601 - -1.4 96,601 - +0.7 96,601 - -0.6 96,640 + +0.5 96,665 + +1.4 96,665 + -1.1 96,665 + -0.8 96,665 + +2.0 96,665 + -3.5 96,666 - +0.8 96,666 - -0.2 96,666 - -2.3 96,666 - -0.1 96,755 + -0.3
Or see this region's nucleotide sequence