Strain Fitness in Variovorax sp. SCN45 around GFF6009

Experiment: Community=Kojac gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Kojac gum; Passage=4
67,666	-				+0.3
68,061	+		GFF6008	0.31	+0.3
68,062	-		GFF6008	0.31	+0.4
68,062	-		GFF6008	0.31	-0.7
68,350	-		GFF6008	0.68	-0.9
68,350	-		GFF6008	0.68	-0.3
68,350	-		GFF6008	0.68	+1.6
68,641	+				+0.2
68,642	-				+0.8
68,642	-				+0.4
68,695	+				-0.5
68,695	+				-2.5
68,887	+		GFF6009	0.23	-0.4
68,887	+		GFF6009	0.23	+0.7
68,887	+		GFF6009	0.23	-0.5
68,887	+		GFF6009	0.23	+0.4
68,888	-		GFF6009	0.23	-0.0
68,888	-		GFF6009	0.23	+0.1
68,888	-		GFF6009	0.23	-1.4
68,938	+		GFF6009	0.28	-0.5
69,055	+		GFF6009	0.38	-2.1
69,325	+		GFF6009	0.61	+1.8
69,325	+		GFF6009	0.61	-0.7
69,325	+		GFF6009	0.61	+0.7
69,326	-		GFF6009	0.61	-1.8
69,326	-		GFF6009	0.61	-2.0
69,416	-		GFF6009	0.69	-1.3
69,524	-		GFF6009	0.78	+0.7
69,586	+		GFF6009	0.83	+0.8
69,586	+		GFF6009	0.83	-1.5
69,587	-		GFF6009	0.83	-1.2
69,701	-				-1.2
69,701	-				-0.1
69,739	+				-1.7
69,739	+				+3.5
69,743	+				-0.1
69,744	-				-1.4
69,999	+		GFF6010	0.15	+0.2
70,000	-		GFF6010	0.15	+1.7
70,000	-		GFF6010	0.15	-3.2
70,000	-		GFF6010	0.15	-0.5
70,242	-		GFF6010	0.33	-1.2
70,242	-		GFF6010	0.33	-1.2
70,598	+		GFF6010	0.59	-1.0