Experiment: Community=Kojac gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5989 and GFF5990 are separated by 13 nucleotides GFF5990 and GFF5991 are separated by 5 nucleotides
GFF5989 - RND efflux system, membrane fusion protein, at 43,047 to 44,291
GFF5989
GFF5990 - RND efflux system, inner membrane transporter, at 44,305 to 47,442
GFF5990
GFF5991 - Efflux transport system, outer membrane factor (OMF) lipoprotein, at 47,448 to 48,932
GFF5991
Position (kb) 44
45
46
47
48 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 43.398 kb on + strand, within GFF5989 at 43.398 kb on + strand, within GFF5989 at 43.398 kb on + strand, within GFF5989 at 43.398 kb on + strand, within GFF5989 at 43.399 kb on - strand, within GFF5989 at 43.980 kb on + strand, within GFF5989 at 43.980 kb on + strand, within GFF5989 at 43.980 kb on + strand, within GFF5989 at 43.980 kb on + strand, within GFF5989 at 43.980 kb on + strand, within GFF5989 at 43.981 kb on - strand, within GFF5989 at 43.981 kb on - strand, within GFF5989 at 44.249 kb on + strand at 44.250 kb on - strand at 44.773 kb on + strand, within GFF5990 at 44.774 kb on - strand, within GFF5990 at 44.774 kb on - strand, within GFF5990 at 44.774 kb on - strand, within GFF5990 at 45.130 kb on + strand, within GFF5990 at 45.373 kb on + strand, within GFF5990 at 45.373 kb on + strand, within GFF5990 at 45.374 kb on - strand, within GFF5990 at 45.564 kb on + strand, within GFF5990 at 45.565 kb on - strand, within GFF5990 at 45.565 kb on - strand, within GFF5990 at 45.937 kb on + strand, within GFF5990 at 45.938 kb on - strand, within GFF5990 at 45.938 kb on - strand, within GFF5990 at 46.094 kb on - strand, within GFF5990 at 46.094 kb on - strand, within GFF5990 at 46.123 kb on + strand, within GFF5990 at 46.561 kb on + strand, within GFF5990 at 46.604 kb on - strand, within GFF5990 at 46.604 kb on - strand, within GFF5990 at 46.721 kb on - strand, within GFF5990 at 46.744 kb on + strand, within GFF5990 at 46.859 kb on - strand, within GFF5990 at 46.879 kb on + strand, within GFF5990 at 46.879 kb on + strand, within GFF5990 at 46.880 kb on - strand, within GFF5990 at 46.963 kb on + strand, within GFF5990 at 47.065 kb on + strand, within GFF5990 at 47.066 kb on - strand, within GFF5990 at 47.456 kb on + strand at 47.848 kb on - strand, within GFF5991 at 47.874 kb on + strand, within GFF5991 at 47.931 kb on + strand, within GFF5991 at 47.931 kb on + strand, within GFF5991 at 47.931 kb on + strand, within GFF5991
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4 remove 43,398 + GFF5989 0.28 +1.2 43,398 + GFF5989 0.28 -0.9 43,398 + GFF5989 0.28 +0.8 43,398 + GFF5989 0.28 -2.1 43,399 - GFF5989 0.28 -1.3 43,980 + GFF5989 0.75 +0.4 43,980 + GFF5989 0.75 +0.4 43,980 + GFF5989 0.75 -0.3 43,980 + GFF5989 0.75 -0.3 43,980 + GFF5989 0.75 -0.9 43,981 - GFF5989 0.75 +1.3 43,981 - GFF5989 0.75 +1.1 44,249 + +3.5 44,250 - +1.2 44,773 + GFF5990 0.15 -1.0 44,774 - GFF5990 0.15 +1.1 44,774 - GFF5990 0.15 +1.0 44,774 - GFF5990 0.15 -1.1 45,130 + GFF5990 0.26 +1.7 45,373 + GFF5990 0.34 -1.7 45,373 + GFF5990 0.34 -3.3 45,374 - GFF5990 0.34 -1.8 45,564 + GFF5990 0.40 -1.0 45,565 - GFF5990 0.40 -4.0 45,565 - GFF5990 0.40 +0.9 45,937 + GFF5990 0.52 -2.8 45,938 - GFF5990 0.52 -0.1 45,938 - GFF5990 0.52 +1.3 46,094 - GFF5990 0.57 -0.1 46,094 - GFF5990 0.57 -1.5 46,123 + GFF5990 0.58 +1.3 46,561 + GFF5990 0.72 -1.8 46,604 - GFF5990 0.73 +2.3 46,604 - GFF5990 0.73 +4.6 46,721 - GFF5990 0.77 +0.1 46,744 + GFF5990 0.78 -0.9 46,859 - GFF5990 0.81 -0.3 46,879 + GFF5990 0.82 +0.2 46,879 + GFF5990 0.82 -0.1 46,880 - GFF5990 0.82 +0.3 46,963 + GFF5990 0.85 -2.1 47,065 + GFF5990 0.88 +1.3 47,066 - GFF5990 0.88 -0.7 47,456 + +1.1 47,848 - GFF5991 0.27 -0.4 47,874 + GFF5991 0.29 -0.4 47,931 + GFF5991 0.33 +1.9 47,931 + GFF5991 0.33 -1.3 47,931 + GFF5991 0.33 +0.8
Or see this region's nucleotide sequence