Experiment: Community=Kojac gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5973 and GFF5974 are separated by 118 nucleotides GFF5974 and GFF5975 are separated by 10 nucleotides GFF5975 and GFF5976 are separated by 226 nucleotides
GFF5973 - Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42), at 27,675 to 29,912
GFF5973
GFF5974 - hypothetical protein, at 30,031 to 30,378
GFF5974
GFF5975 - Two-component transcriptional response regulator, LuxR family, at 30,389 to 30,964
GFF5975
GFF5976 - Transcriptional regulator, AraC family, at 31,191 to 32,201
GFF5976
Position (kb) 30
31 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 29.415 kb on + strand, within GFF5973 at 29.416 kb on - strand, within GFF5973 at 29.416 kb on - strand, within GFF5973 at 29.667 kb on + strand, within GFF5973 at 29.667 kb on + strand, within GFF5973 at 29.667 kb on + strand, within GFF5973 at 29.667 kb on + strand, within GFF5973 at 29.667 kb on + strand, within GFF5973 at 29.668 kb on - strand, within GFF5973 at 29.668 kb on - strand, within GFF5973 at 29.668 kb on - strand, within GFF5973 at 29.668 kb on - strand, within GFF5973 at 29.668 kb on - strand, within GFF5973 at 29.679 kb on + strand, within GFF5973 at 29.679 kb on + strand, within GFF5973 at 29.679 kb on + strand, within GFF5973 at 29.679 kb on + strand, within GFF5973 at 29.679 kb on + strand, within GFF5973 at 29.679 kb on + strand, within GFF5973 at 29.680 kb on - strand, within GFF5973 at 29.680 kb on - strand, within GFF5973 at 29.680 kb on - strand, within GFF5973 at 29.680 kb on - strand, within GFF5973 at 29.680 kb on - strand, within GFF5973 at 29.680 kb on - strand, within GFF5973 at 29.680 kb on - strand, within GFF5973 at 29.680 kb on - strand, within GFF5973 at 29.680 kb on - strand, within GFF5973 at 29.826 kb on + strand at 29.827 kb on - strand at 29.829 kb on + strand at 29.829 kb on + strand at 29.830 kb on - strand at 29.830 kb on - strand at 29.830 kb on - strand at 29.830 kb on - strand at 29.830 kb on - strand at 29.991 kb on + strand at 29.991 kb on + strand at 29.991 kb on + strand at 29.991 kb on + strand at 29.991 kb on + strand at 29.991 kb on + strand at 29.991 kb on + strand at 29.991 kb on + strand at 29.991 kb on + strand at 29.992 kb on - strand at 29.992 kb on - strand at 29.992 kb on - strand at 29.992 kb on - strand at 29.992 kb on - strand at 29.992 kb on - strand at 29.992 kb on - strand at 30.037 kb on + strand at 30.037 kb on + strand at 30.037 kb on + strand at 30.037 kb on + strand at 30.038 kb on + strand at 30.038 kb on - strand at 30.038 kb on - strand at 30.238 kb on + strand, within GFF5974 at 30.239 kb on - strand, within GFF5974 at 30.239 kb on - strand, within GFF5974 at 30.377 kb on - strand at 30.480 kb on + strand, within GFF5975 at 30.480 kb on + strand, within GFF5975 at 30.480 kb on + strand, within GFF5975 at 30.480 kb on + strand, within GFF5975 at 30.481 kb on - strand, within GFF5975 at 30.481 kb on - strand, within GFF5975 at 30.481 kb on - strand, within GFF5975 at 30.523 kb on - strand, within GFF5975 at 30.523 kb on - strand, within GFF5975 at 30.523 kb on - strand, within GFF5975 at 30.523 kb on - strand, within GFF5975 at 30.755 kb on - strand, within GFF5975 at 30.855 kb on + strand, within GFF5975 at 30.855 kb on + strand, within GFF5975 at 30.855 kb on + strand, within GFF5975 at 30.855 kb on + strand, within GFF5975 at 30.855 kb on + strand, within GFF5975 at 30.855 kb on + strand, within GFF5975 at 30.855 kb on + strand, within GFF5975 at 30.855 kb on + strand, within GFF5975 at 30.855 kb on + strand, within GFF5975 at 30.855 kb on + strand, within GFF5975 at 30.855 kb on + strand, within GFF5975 at 30.855 kb on + strand, within GFF5975 at 30.855 kb on + strand, within GFF5975 at 30.855 kb on + strand, within GFF5975 at 30.856 kb on - strand, within GFF5975 at 30.856 kb on - strand, within GFF5975 at 30.856 kb on - strand, within GFF5975 at 31.062 kb on + strand at 31.062 kb on + strand at 31.063 kb on - strand at 31.063 kb on - strand at 31.207 kb on + strand at 31.207 kb on + strand at 31.207 kb on + strand at 31.208 kb on - strand at 31.208 kb on - strand at 31.383 kb on + strand, within GFF5976 at 31.383 kb on + strand, within GFF5976 at 31.902 kb on + strand, within GFF5976 at 31.902 kb on + strand, within GFF5976 at 31.903 kb on - strand, within GFF5976 at 31.903 kb on - strand, within GFF5976
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4 remove 29,415 + GFF5973 0.78 +0.1 29,416 - GFF5973 0.78 -0.5 29,416 - GFF5973 0.78 -0.2 29,667 + GFF5973 0.89 +0.8 29,667 + GFF5973 0.89 -0.7 29,667 + GFF5973 0.89 -1.9 29,667 + GFF5973 0.89 -0.1 29,667 + GFF5973 0.89 -0.7 29,668 - GFF5973 0.89 -1.3 29,668 - GFF5973 0.89 +1.9 29,668 - GFF5973 0.89 -0.3 29,668 - GFF5973 0.89 -1.4 29,668 - GFF5973 0.89 -0.7 29,679 + GFF5973 0.90 -0.3 29,679 + GFF5973 0.90 -1.5 29,679 + GFF5973 0.90 -0.4 29,679 + GFF5973 0.90 -2.4 29,679 + GFF5973 0.90 -2.9 29,679 + GFF5973 0.90 +0.9 29,680 - GFF5973 0.90 -1.1 29,680 - GFF5973 0.90 -1.2 29,680 - GFF5973 0.90 +0.3 29,680 - GFF5973 0.90 +0.3 29,680 - GFF5973 0.90 -0.2 29,680 - GFF5973 0.90 -2.4 29,680 - GFF5973 0.90 -1.6 29,680 - GFF5973 0.90 -0.9 29,680 - GFF5973 0.90 +0.1 29,826 + +1.0 29,827 - -0.1 29,829 + -0.6 29,829 + -2.7 29,830 - +1.3 29,830 - -0.6 29,830 - -1.3 29,830 - -0.0 29,830 - +0.8 29,991 + +0.8 29,991 + -1.9 29,991 + +1.3 29,991 + +5.4 29,991 + +0.4 29,991 + +1.4 29,991 + +1.3 29,991 + -0.7 29,991 + +1.3 29,992 - -0.2 29,992 - +0.0 29,992 - -1.9 29,992 - -1.3 29,992 - -3.7 29,992 - +0.3 29,992 - +1.2 30,037 + +0.1 30,037 + -1.9 30,037 + -1.2 30,037 + +0.6 30,038 + +2.4 30,038 - +0.9 30,038 - +0.6 30,238 + GFF5974 0.59 +0.5 30,239 - GFF5974 0.60 -2.2 30,239 - GFF5974 0.60 -1.1 30,377 - -0.1 30,480 + GFF5975 0.16 +1.2 30,480 + GFF5975 0.16 +0.6 30,480 + GFF5975 0.16 +0.6 30,480 + GFF5975 0.16 +0.5 30,481 - GFF5975 0.16 +2.3 30,481 - GFF5975 0.16 +1.7 30,481 - GFF5975 0.16 +1.7 30,523 - GFF5975 0.23 +0.6 30,523 - GFF5975 0.23 -1.1 30,523 - GFF5975 0.23 +0.3 30,523 - GFF5975 0.23 -1.1 30,755 - GFF5975 0.64 -0.9 30,855 + GFF5975 0.81 -1.2 30,855 + GFF5975 0.81 -2.1 30,855 + GFF5975 0.81 +1.6 30,855 + GFF5975 0.81 +0.3 30,855 + GFF5975 0.81 +0.4 30,855 + GFF5975 0.81 -0.1 30,855 + GFF5975 0.81 -0.8 30,855 + GFF5975 0.81 +0.5 30,855 + GFF5975 0.81 +0.6 30,855 + GFF5975 0.81 -0.6 30,855 + GFF5975 0.81 -0.3 30,855 + GFF5975 0.81 +2.6 30,855 + GFF5975 0.81 -2.3 30,855 + GFF5975 0.81 +0.2 30,856 - GFF5975 0.81 -1.6 30,856 - GFF5975 0.81 +0.3 30,856 - GFF5975 0.81 -3.4 31,062 + -1.7 31,062 + -3.8 31,063 - -1.3 31,063 - -0.3 31,207 + +1.1 31,207 + -1.4 31,207 + -0.1 31,208 - -2.5 31,208 - -2.3 31,383 + GFF5976 0.19 -2.3 31,383 + GFF5976 0.19 -0.7 31,902 + GFF5976 0.70 -1.7 31,902 + GFF5976 0.70 +1.9 31,903 - GFF5976 0.70 +0.3 31,903 - GFF5976 0.70 +0.0
Or see this region's nucleotide sequence