Strain Fitness in Variovorax sp. SCN45 around GFF597

Experiment: Community=Kojac gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF595 and GFF596 are separated by 72 nucleotidesGFF596 and GFF597 are separated by 3 nucleotidesGFF597 and GFF598 are separated by 116 nucleotidesGFF598 and GFF599 are separated by 46 nucleotidesGFF599 and GFF600 are separated by 60 nucleotides GFF595 - Transcriptional regulator, LysR family, at 641,673 to 642,551 GFF595 GFF596 - no description, at 642,624 to 643,160 GFF596 GFF597 - Uncharacterized MFS-type transporter, at 643,164 to 644,714 GFF597 GFF598 - no description, at 644,831 to 645,157 GFF598 GFF599 - no description, at 645,204 to 645,434 GFF599 GFF600 - Metal-dependent phosphohydrolase, HD subdomain, at 645,495 to 646,085 GFF600 Position (kb) 643 644 645Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 642.238 kb on + strand, within GFF595at 642.238 kb on + strand, within GFF595at 642.238 kb on + strand, within GFF595at 642.238 kb on + strand, within GFF595at 642.238 kb on + strand, within GFF595at 642.238 kb on + strand, within GFF595at 642.238 kb on + strand, within GFF595at 642.238 kb on + strand, within GFF595at 642.238 kb on + strand, within GFF595at 642.238 kb on + strand, within GFF595at 642.239 kb on - strand, within GFF595at 642.239 kb on - strand, within GFF595at 642.239 kb on - strand, within GFF595at 642.239 kb on - strand, within GFF595at 642.239 kb on - strand, within GFF595at 642.239 kb on - strand, within GFF595at 642.239 kb on - strand, within GFF595at 642.239 kb on - strand, within GFF595at 642.375 kb on + strand, within GFF595at 642.375 kb on + strand, within GFF595at 642.375 kb on + strand, within GFF595at 642.376 kb on - strand, within GFF595at 642.376 kb on - strand, within GFF595at 642.563 kb on + strandat 642.591 kb on + strandat 642.604 kb on + strandat 642.732 kb on + strand, within GFF596at 642.732 kb on + strand, within GFF596at 642.732 kb on + strand, within GFF596at 642.732 kb on + strand, within GFF596at 642.732 kb on + strand, within GFF596at 642.732 kb on + strand, within GFF596at 642.733 kb on - strand, within GFF596at 642.733 kb on - strand, within GFF596at 642.733 kb on - strand, within GFF596at 642.733 kb on - strand, within GFF596at 642.733 kb on - strand, within GFF596at 642.733 kb on - strand, within GFF596at 642.733 kb on - strand, within GFF596at 642.733 kb on - strand, within GFF596at 642.805 kb on + strand, within GFF596at 642.805 kb on + strand, within GFF596at 642.806 kb on - strand, within GFF596at 643.248 kb on + strandat 643.248 kb on + strandat 643.248 kb on + strandat 643.248 kb on + strandat 643.249 kb on - strandat 643.249 kb on - strandat 643.321 kb on - strand, within GFF597at 643.380 kb on + strand, within GFF597at 643.381 kb on - strand, within GFF597at 643.381 kb on - strand, within GFF597at 643.440 kb on + strand, within GFF597at 643.440 kb on + strand, within GFF597at 643.441 kb on - strand, within GFF597at 643.641 kb on + strand, within GFF597at 643.641 kb on + strand, within GFF597at 643.641 kb on + strand, within GFF597at 643.641 kb on + strand, within GFF597at 643.642 kb on - strand, within GFF597at 643.642 kb on - strand, within GFF597at 643.642 kb on - strand, within GFF597at 643.825 kb on - strand, within GFF597at 643.825 kb on - strand, within GFF597at 643.825 kb on - strand, within GFF597at 643.853 kb on - strand, within GFF597at 643.853 kb on - strand, within GFF597at 643.951 kb on - strand, within GFF597at 643.951 kb on - strand, within GFF597at 644.355 kb on + strand, within GFF597at 644.355 kb on + strand, within GFF597at 644.355 kb on + strand, within GFF597at 644.355 kb on + strand, within GFF597at 644.356 kb on - strand, within GFF597at 644.356 kb on - strand, within GFF597at 644.356 kb on - strand, within GFF597at 644.356 kb on - strand, within GFF597at 644.356 kb on - strand, within GFF597at 644.356 kb on - strand, within GFF597at 644.356 kb on - strand, within GFF597at 644.356 kb on - strand, within GFF597at 644.412 kb on + strand, within GFF597at 644.412 kb on + strand, within GFF597at 644.412 kb on + strand, within GFF597at 644.412 kb on + strand, within GFF597at 644.412 kb on + strand, within GFF597at 644.712 kb on + strandat 644.713 kb on - strandat 644.750 kb on + strandat 644.830 kb on + strandat 644.830 kb on + strandat 644.928 kb on + strand, within GFF598at 644.928 kb on + strand, within GFF598at 644.928 kb on + strand, within GFF598at 645.186 kb on + strandat 645.186 kb on + strandat 645.186 kb on + strandat 645.187 kb on - strandat 645.406 kb on - strand, within GFF599at 645.458 kb on + strandat 645.458 kb on + strandat 645.458 kb on + strandat 645.458 kb on + strandat 645.458 kb on + strandat 645.458 kb on + strandat 645.459 kb on - strandat 645.459 kb on - strandat 645.459 kb on - strandat 645.459 kb on - strandat 645.459 kb on - strandat 645.459 kb on - strandat 645.459 kb on - strandat 645.459 kb on - strandat 645.459 kb on - strandat 645.459 kb on - strandat 645.459 kb on - strandat 645.459 kb on - strandat 645.633 kb on + strand, within GFF600at 645.634 kb on - strand, within GFF600at 645.634 kb on - strand, within GFF600at 645.634 kb on - strand, within GFF600at 645.657 kb on + strand, within GFF600at 645.658 kb on - strand, within GFF600at 645.658 kb on - strand, within GFF600at 645.658 kb on - strand, within GFF600at 645.714 kb on + strand, within GFF600at 645.714 kb on + strand, within GFF600at 645.714 kb on + strand, within GFF600at 645.714 kb on + strand, within GFF600at 645.714 kb on + strand, within GFF600at 645.714 kb on + strand, within GFF600at 645.714 kb on + strand, within GFF600at 645.714 kb on + strand, within GFF600at 645.714 kb on + strand, within GFF600at 645.714 kb on + strand, within GFF600at 645.714 kb on + strand, within GFF600

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4
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642,238 + GFF595 0.64 +1.1
642,238 + GFF595 0.64 +1.7
642,238 + GFF595 0.64 -0.7
642,238 + GFF595 0.64 -1.2
642,238 + GFF595 0.64 -0.9
642,238 + GFF595 0.64 -1.9
642,238 + GFF595 0.64 -2.2
642,238 + GFF595 0.64 +1.4
642,238 + GFF595 0.64 -0.8
642,238 + GFF595 0.64 -2.4
642,239 - GFF595 0.64 -0.5
642,239 - GFF595 0.64 +1.5
642,239 - GFF595 0.64 -2.0
642,239 - GFF595 0.64 +0.4
642,239 - GFF595 0.64 -1.0
642,239 - GFF595 0.64 -0.5
642,239 - GFF595 0.64 +0.8
642,239 - GFF595 0.64 -1.3
642,375 + GFF595 0.80 -1.1
642,375 + GFF595 0.80 +1.0
642,375 + GFF595 0.80 -3.8
642,376 - GFF595 0.80 +0.7
642,376 - GFF595 0.80 -0.2
642,563 + -2.5
642,591 + -0.9
642,604 + -1.5
642,732 + GFF596 0.20 -3.0
642,732 + GFF596 0.20 -2.0
642,732 + GFF596 0.20 -1.6
642,732 + GFF596 0.20 +3.1
642,732 + GFF596 0.20 -2.7
642,732 + GFF596 0.20 +2.3
642,733 - GFF596 0.20 +1.6
642,733 - GFF596 0.20 -2.2
642,733 - GFF596 0.20 -1.2
642,733 - GFF596 0.20 -1.4
642,733 - GFF596 0.20 +0.1
642,733 - GFF596 0.20 -0.2
642,733 - GFF596 0.20 +0.1
642,733 - GFF596 0.20 +1.7
642,805 + GFF596 0.34 +0.2
642,805 + GFF596 0.34 -0.9
642,806 - GFF596 0.34 -1.3
643,248 + -1.5
643,248 + -1.1
643,248 + -2.3
643,248 + +0.5
643,249 - -3.3
643,249 - -1.9
643,321 - GFF597 0.10 -3.2
643,380 + GFF597 0.14 +0.0
643,381 - GFF597 0.14 -0.8
643,381 - GFF597 0.14 -2.6
643,440 + GFF597 0.18 +1.3
643,440 + GFF597 0.18 +3.3
643,441 - GFF597 0.18 +0.7
643,641 + GFF597 0.31 +1.1
643,641 + GFF597 0.31 +0.8
643,641 + GFF597 0.31 -0.3
643,641 + GFF597 0.31 -3.4
643,642 - GFF597 0.31 -1.3
643,642 - GFF597 0.31 +0.6
643,642 - GFF597 0.31 -0.9
643,825 - GFF597 0.43 -0.3
643,825 - GFF597 0.43 +0.7
643,825 - GFF597 0.43 +0.7
643,853 - GFF597 0.44 +0.1
643,853 - GFF597 0.44 -0.3
643,951 - GFF597 0.51 -0.3
643,951 - GFF597 0.51 -3.1
644,355 + GFF597 0.77 +1.5
644,355 + GFF597 0.77 -0.2
644,355 + GFF597 0.77 +1.3
644,355 + GFF597 0.77 +0.5
644,356 - GFF597 0.77 -1.0
644,356 - GFF597 0.77 -1.1
644,356 - GFF597 0.77 -2.5
644,356 - GFF597 0.77 +0.6
644,356 - GFF597 0.77 -0.4
644,356 - GFF597 0.77 +0.1
644,356 - GFF597 0.77 +0.9
644,356 - GFF597 0.77 -1.8
644,412 + GFF597 0.80 -1.7
644,412 + GFF597 0.80 +1.0
644,412 + GFF597 0.80 +3.0
644,412 + GFF597 0.80 -0.6
644,412 + GFF597 0.80 +0.7
644,712 + +0.1
644,713 - -1.5
644,750 + -0.5
644,830 + -0.7
644,830 + +0.1
644,928 + GFF598 0.30 -1.5
644,928 + GFF598 0.30 +1.7
644,928 + GFF598 0.30 +1.7
645,186 + -1.3
645,186 + -0.3
645,186 + +2.0
645,187 - -0.6
645,406 - GFF599 0.87 -0.6
645,458 + +1.3
645,458 + -0.9
645,458 + -2.5
645,458 + -0.1
645,458 + -0.3
645,458 + -1.1
645,459 - -2.0
645,459 - -1.5
645,459 - +1.2
645,459 - -2.6
645,459 - +0.1
645,459 - -1.9
645,459 - +1.7
645,459 - -2.8
645,459 - +1.5
645,459 - -2.3
645,459 - -3.0
645,459 - -1.2
645,633 + GFF600 0.23 -1.3
645,634 - GFF600 0.24 +1.0
645,634 - GFF600 0.24 +1.1
645,634 - GFF600 0.24 -0.1
645,657 + GFF600 0.27 -3.8
645,658 - GFF600 0.28 -1.6
645,658 - GFF600 0.28 +0.0
645,658 - GFF600 0.28 -2.8
645,714 + GFF600 0.37 -0.3
645,714 + GFF600 0.37 +1.6
645,714 + GFF600 0.37 -0.8
645,714 + GFF600 0.37 -1.1
645,714 + GFF600 0.37 -0.9
645,714 + GFF600 0.37 +1.0
645,714 + GFF600 0.37 -1.6
645,714 + GFF600 0.37 -0.8
645,714 + GFF600 0.37 +0.1
645,714 + GFF600 0.37 +1.2
645,714 + GFF600 0.37 +0.6

Or see this region's nucleotide sequence